Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1006 ATGTTTTTCTCCAAAACCAAATCTCTTAATTCTACACCAAACCCTCCTCGTTACCGAGGTGTCCGCCGTCGGAGCTCCGGCAAGTGGGTTTCAGAGATTCGGGAGCCCAGGAAGCCCAATAGGATTTGGTTGGGAACTTTCCCTACCCCGGAAATGGCTGCCATCGCTTATGACGTGGCAGCCCTGGCTGTCAAGGGCCCCAACGCTGACCTCAACTTTCCTAATTTGGCATCTTCCTTACCAGTGCCGGCCTCCACCGCCGCACGTGATATTCAGGCTGCAGCCACGTCTGCTGCAACAGCTATAGGAGCAGCTGCAGCTACAATAGGGTTAGATGGTAATCCTGCGAGTGGGAGTACTAGAGAAAAGGAAGATGAGGAAGGAGATGAAGGAGAGGAATTAGTAGAGGGGGGATTTGTAGATGAAGATATGATATTTGATATGCCAAATATTCTTATGAATATGGCTGAAGGAATGCTTCTCACTCCTCCATCCTTCAACTTCAACATCAATGCTCCAAATGATTATGAATATCCTCCAACCTATACTCAAGATAACCTTTGGGAATTCCCTTAA 576 47.92 MFFSKTKSLNSTPNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALAVKGPNADLNFPNLASSLPVPASTAARDIQAAATSAATAIGAAAATIGLDGNPASGSTREKEDEEGDEGEELVEGGFVDEDMIFDMPNILMNMAEGMLLTPPSFNFNINAPNDYEYPPTYTQDNLWEFP 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24235507 24236082 - CaPI482276_04g010060.1 Cam04g1006 125084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1006 191 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g1006 191 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g1006 191 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g1006 191 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g1006 191 MobiDBLite consensus disorder prediction 1 15 - -
Cam04g1006 191 MobiDBLite consensus disorder prediction 1 31 - -
Cam04g1006 191 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Cam04g1006 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 153 IPR051032 -
Cam04g1006 191 SMART rav1_2 17 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g1006 191 MobiDBLite consensus disorder prediction 110 137 - -
Cam04g1006 191 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677(InterPro)
Cam04g1006 191 Pfam AP2 domain 16 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g1006 191 CDD AP2 16 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1006 Cam-Chr4:24235507 Cam10g1890 Cam-Chr10:32989857 7.80E-43 dispersed
Cam10g1889 Cam-Chr10:32980969 Cam04g1006 Cam-Chr4:24235507 1.90E-26 wgd
Cam04g1006 Cam-Chr4:24235507 Cam08g1938 Cam-Chr8:25311245 2.90E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51776 PF00847 AP2 1.40E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1006 - - - 0.0