Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1010 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATAAAACCTGTTCAAAGTAAGGCAGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTCGAGGTAAATGCACTGAGAAAAAGTACACTTAAGAAGCCAATAACTGTTGGCATACCTCGGTCACCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCGTCTGAAATGGCTGCTATGAAGAGATCATCAAAATCATCCAGCTCTTCAAGAATCTCAGAAGCTGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGAAGCCACTGAGTCAGGCTCTTCTTCAGATAAGGGGGGACGTGTGGTTGAAATTTCCCTGGTTCCAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTGCTGTTAAATCACTGGTTGAAAGTGCTCATTCTTCTCAGTTGCCCGCTGCGAAAACAAAAAAAAATGTTGAGGTTGTTACTGTGGAACAAAACGTCAATCCCACTTTGTCAAGGAAAGTTGGATCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAAGAGTCCATTACTCCACCATCTATATCTTCTTGCACTATTGGCAAGGTCTTAGAGAAGGAGAAGAAAATTCTTGCCGGAAGCAGGGTAGCAAATAAAGTGGCATCATCTAAGGCAGGACGGAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGCAATAAGGTAACCAAGTTATCTAGAAGTGCCTCCCGTTCTGTTAAACCAGTTATTAGAAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGGTGATACGGATCCTAGTAAAAGGAAGTTGATATGTGAGAGGTGCCACTGTGCAATGAATAGTGCAGCTAAAGACTCAAAGAAGGGCGCTGCATCCCAGTTTAGTGGTCTTTGTCCTGATGTAAACATGACCAATTCAAAATCTGGTGGTAACAAATCAGGCTTCAATGTGGATGGCAAGGCTTCTGATGTTAAAGTAAAAAGAAATACAAGGGTGCGGGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGCAGTACGACGAGTATTATAAGTGACGATAGCAATGGGCACGGACCCAGTAATGGTAACAGACCTCATATGTCAAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGCAGTATGGGGTCCTCAGCTTGCGGCATTTTAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACAGTGTATCTTGCTGAGCTAACCGGCACTAATTGCCTATTTGCCATTAAGGTCATGGATAATGAGTTTCTAGCAAGACGGAAGAAAATGCCTAGAGCACAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAATTTACTTCAGATAATCTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAATCCAACACTCTTGAAGTCATCATCCTTCAATGCGGACTTGGTGAAAACATCAGGTCCCTGTACAGATTCTAGTTGTGCTGAGCCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCCAAAACAAGGAAGTCAAAACTTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCGTTGCTGAACCCACTGATGCACGTTCGAATTCCTTCGTTGGCACTCATGAGTATTTGGCTCCCGAGATCATTAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACGTTTGGTGTTTTTCTCTATGAGCTTCTGTATGGTAAAACCCCTTTCAAGGGTTCCAATAATGAAGAAACATTAGCCAATGTAATAATGCAGGGCCTCAGTTTTCCCGACAGCCCAATTGTTAGTTTCCAAGCAAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCCGAACACCGATTCGGGACAGAGAAAGGGGCTGCAGAGATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGGTGTGCAGTTCCTCCAGAACTTCCAGACTTATGTGATATGGACATTACAAGTATGATTGCTCAACAAAACAAGTTCAGAAAAATGAGTTACCCAGAGGAGTTTTCCGGATTACAAATCCTTTTCGTTACCTTGGTAGCCACTGGAAAACAGGAAATTTTAGGCCAACTTATGGAAATTTTCCAGACAAAAATGCCCAAGATTAAGACGAACCGTGTCAAGTATCCGGAGGGATGGGAGCTAATTGAACCAACTCTCCGAGAATTGCAAGCTAAGATGAGAGAAGCCGAGAATGACCCACATGATGGTAAGAGAAAATGTGAGACTTTGTGGCCTATATTCAAAATAGCCCATCAGAAAAGCCGCTATATATTTGACCTTTATCATCGAAGGAAGGAAATATCTAAGGAATTATTTGAATTCTGCTTGGATCAAGGCTATGCAGATCGTAACTTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTTTGTGCTGTCTAAGATGCATGCAACCCCGAGATCACAACTTTGCGACAACATGTGTGTGCCGGGTTCCCAAGCACCTGAGGGAGGAGAAGGTTATCGAGTGTGTGCATTGTGGTTGCAGGGGCTGCGCTAGTGGAGATTGA 3096 43.25 MGSGTCEIVEAREEIKPVQSKAGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKSSSSSRISEAGRIKTLYNSVMVEATESGSSSDKGGRVVEISLVPEEKKLNFEKRLEHVQASAVKSLVESAHSSQLPAAKTKKNVEVVTVEQNVNPTLSRKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILAGSRVANKVASSKAGRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNGDTDPSKRKLICERCHCAMNSAAKDSKKGAASQFSGLCPDVNMTNSKSGGNKSGFNVDGKASDVKVKRNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGPSNGNRPHMSKDVRWEAIRHAQLQYGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKLDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGSNNEETLANVIMQGLSFPDSPIVSFQARDLIRGLLVKEPEHRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDMDITSMIAQQNKFRKMSYPEEFSGLQILFVTLVATGKQEILGQLMEIFQTKMPKIKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELFEFCLDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFATTCVCRVPKHLREEKVIECVHCGCRGCASGD 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24292220 24299221 - CaPI482276_04g010100.1 Cam04g1010 125088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1010 1031 MobiDBLite consensus disorder prediction 283 311 - -
Cam04g1010 1031 MobiDBLite consensus disorder prediction 271 346 - -
Cam04g1010 1031 FunFam serine/threonine-protein kinase D6PK-like 709 832 - -
Cam04g1010 1031 SUPERFAMILY Protein kinase-like (PK-like) 456 832 IPR011009 -
Cam04g1010 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1010 1031 FunFam serine/threonine-protein kinase D6PK-like 565 632 - -
Cam04g1010 1031 MobiDBLite consensus disorder prediction 388 457 - -
Cam04g1010 1031 CDD STKc_phototropin_like 479 835 - -
Cam04g1010 1031 ProSitePatterns G10 protein signature 2. 1019 1028 IPR018230 GO:0005634(InterPro)
Cam04g1010 1031 ProSiteProfiles Protein kinase domain profile. 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1010 1031 PRINTS G10 protein signature 898 918 IPR001748 GO:0005634(InterPro)
Cam04g1010 1031 PRINTS G10 protein signature 933 956 IPR001748 GO:0005634(InterPro)
Cam04g1010 1031 PRINTS G10 protein signature 1019 1028 IPR001748 GO:0005634(InterPro)
Cam04g1010 1031 PRINTS G10 protein signature 957 982 IPR001748 GO:0005634(InterPro)
Cam04g1010 1031 PRINTS G10 protein signature 983 1008 IPR001748 GO:0005634(InterPro)
Cam04g1010 1031 Gene3D Transferase(Phosphotransferase) domain 1 561 630 - -
Cam04g1010 1031 MobiDBLite consensus disorder prediction 422 452 - -
Cam04g1010 1031 MobiDBLite consensus disorder prediction 404 421 - -
Cam04g1010 1031 ProSitePatterns G10 protein signature 1. 986 1008 IPR018230 GO:0005634(InterPro)
Cam04g1010 1031 FunFam Serine/threonine-protein kinase D6PK-like 479 564 - -
Cam04g1010 1031 PANTHER FLIPPASE KINASE 1-RELATED 302 841 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam04g1010 1031 Gene3D Transferase(Phosphotransferase) domain 1 707 832 - -
Cam04g1010 1031 MobiDBLite consensus disorder prediction 328 345 - -
Cam04g1010 1031 SMART serkin_6 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1010 1031 Pfam Protein kinase domain 711 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1010 1031 Pfam Protein kinase domain 482 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1010 1031 Pfam Pre-mRNA-splicing factor BUD31 887 1029 IPR001748 GO:0005634(InterPro)
Cam04g1010 1031 Gene3D Phosphorylase Kinase; domain 1 479 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1010 Cam-Chr4:24292220 Cam05g0015 Cam-Chr5:621851 4.80E-147 dispersed
Cam01g1304 Cam-Chr1:24716914 Cam04g1010 Cam-Chr4:24292220 1.20E-77 transposed
Cam09g0839 Cam-Chr9:8679907 Cam04g1010 Cam-Chr4:24292220 1.20E-59 transposed
Cam02g2273 Cam-Chr2:35358595 Cam04g1010 Cam-Chr4:24292220 3.40E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85129 PF00069 Pkinase 7.70E-36 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1010 - - - 0.0