Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1022 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGCCATCGTCTCTGTGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCTGTTCCCCCTGTTGTCGAATTGTCCCTGCCGGACTCCACCACAGATCTGACCATCCCTCCCCTCACGGCCGTCCGATCTGAGGCCGCAAACCAACCGAATCCTACTCCGAACCCGAACCCCAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA 537 54.75 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVELSLPDSTTDLTIPPLTAVRSEAANQPNPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24391323 24391859 + CaPI482276_04g010220.1 Cam04g1022 125100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1022 178 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cam04g1022 178 MobiDBLite consensus disorder prediction 84 106 - -
Cam04g1022 178 MobiDBLite consensus disorder prediction 48 65 - -
Cam04g1022 178 FunFam Zinc finger AN1-type containing 6 95 174 - -
Cam04g1022 178 Gene3D - 1 69 - -
Cam04g1022 178 MobiDBLite consensus disorder prediction 66 80 - -
Cam04g1022 178 MobiDBLite consensus disorder prediction 46 119 - -
Cam04g1022 178 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cam04g1022 178 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cam04g1022 178 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 178 IPR050652 -
Cam04g1022 178 ProSiteProfiles Zinc finger AN1-type profile. 113 159 IPR000058 GO:0008270(InterPro)
Cam04g1022 178 SUPERFAMILY AN1-like Zinc finger 101 173 IPR035896 -
Cam04g1022 178 SMART AN1_Zf_4 119 156 IPR000058 GO:0008270(InterPro)
Cam04g1022 178 Pfam AN1-like Zinc finger 119 155 IPR000058 GO:0008270(InterPro)
Cam04g1022 178 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cam04g1022 178 Gene3D - 96 174 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2295 Cam-Chr2:35548226 Cam04g1022 Cam-Chr4:24391323 2.10E-41 dispersed
Cam03g1347 Cam-Chr3:27544117 Cam04g1022 Cam-Chr4:24391323 6.20E-31 dispersed
Cam04g1022 Cam-Chr4:24391323 Cam09g0424 Cam-Chr9:4543704 2.50E-35 dispersed
Cam04g1022 Cam-Chr4:24391323 Cam01g0350 Cam-Chr1:3878766 5.80E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1022 - - - 0.0