Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1023 ATGGCGGATTCGCTGAGAAAAACGCCGTCGTTTCCAGCGGCCTTCACTATCGCCGTCGTCGCCTTCGCTTCTCTGTTCTCTGCTGTTTCGTCTTATCACCGCCCGCCACCTCGCCGGAATCTCTTCGTTCCTCGCCGTCAAGATCTCGACTCCGATTCTCCAGAACAGGTACATATATCTCTTGTTGGTGTTGATAAAATGAGGATAACATGGATCACAGAGGACTCTGCACCAGCTATGGTGGAATATGGCACATTCCCTGGAGTTTACAACAAGAATGTAACTGGAACTACTTCCTCATACAAATATGCATTATATGAATCTGGTAATATTCATGATGTAACCATTGGTCCTCTCCATCCCGACACCACTTATTACTATCGCTGCAGCTCGAACTCCGCCCGGAACTTCACTTTCAAAACCCCTCCTTCTCGGCTCCCCATCAAATTTGTTGTCATTGGTGATCTTGGGCAGACAGAATGGACCCAAAAAACTCTCGAACATGTAGCGAAATCAGACTATGATGTGCTGCTACTTCCCGGTGACTTGTCGTATGCTGATTTTGTTCAGTCTCTGTGGGACTCGTTCGGCAGGCTCGTCGAGCCACTGGCTAGCCAAAGGCCATGGATGGTGACTCAGGGAAACCATGAAGTAGAGCGCGTCCCAGTGATTCATTCCCAACCTTTTACAGCATACAATGCAAGATGGCACATGCCCTTCGAAGAAAGCTCGTCGAATTCCAACCTTTATTATTCATTTGACACGGCTGGCGTGCACGTCATTATGTTGGGATCTTATACTGATTTTGACAAGAGTTCAGCTCAGTACGAATGGCTCGTAGCAGACTTGAAGAAGATCGAGCGCGCAACAACCCCGTGGATTCTGGTGCTTATTCATGCTCCATGGTATAACTCCAACACTGCTCACCAGGGAGACAGAGAGTCTGTAGACATGAAGGCAGCCATGGAAGATCTGCTCTACCAAGCTCGAGTAGACGTGGTGTTTGCTGGGCATGTCCATGCTTACGAGCGTTTCACTCGTGTTTATAATGGGGAAGCAAACAATTGTGCACCAATACATATCACAATCGGCGACGGGGGCAACCGTGAAGGCCTTGCGAGCAAGTATATCGATCCAAAGCCAATGATTTCGTTATTCAGGCAAGCGAGCTTTGGACATGGTCGGTTGGATGTGGTGAATGCGACACATGCACTCTGGACATGGCACAGGAATGACGACAACGTAGCGGTCGTTGGCGACTCACTCTGGTTTACAAGCCTCTCTTCTGACCCAGCTTGTAGAATATGA 1308 48.7 MADSLRKTPSFPAAFTIAVVAFASLFSAVSSYHRPPPRRNLFVPRRQDLDSDSPEQVHISLVGVDKMRITWITEDSAPAMVEYGTFPGVYNKNVTGTTSSYKYALYESGNIHDVTIGPLHPDTTYYYRCSSNSARNFTFKTPPSRLPIKFVVIGDLGQTEWTQKTLEHVAKSDYDVLLLPGDLSYADFVQSLWDSFGRLVEPLASQRPWMVTQGNHEVERVPVIHSQPFTAYNARWHMPFEESSSNSNLYYSFDTAGVHVIMLGSYTDFDKSSAQYEWLVADLKKIERATTPWILVLIHAPWYNSNTAHQGDRESVDMKAAMEDLLYQARVDVVFAGHVHAYERFTRVYNGEANNCAPIHITIGDGGNREGLASKYIDPKPMISLFRQASFGHGRLDVVNATHALWTWHRNDDNVAVVGDSLWFTSLSSDPACRI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24403136 24407961 + CaPI482276_04g010230.1 Cam04g1023 125101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1023 435 CDD MPP_PAPs 147 426 IPR041792 -
Cam04g1023 435 Pfam Calcineurin-like phosphoesterase 148 342 IPR004843 GO:0016787(InterPro)
Cam04g1023 435 SUPERFAMILY Purple acid phosphatase, N-terminal domain 46 143 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cam04g1023 435 Pfam Purple acid Phosphatase, N-terminal domain 54 141 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cam04g1023 435 PANTHER ACID PHOSPHATASE RELATED 15 428 IPR039331 GO:0003993(InterPro)
Cam04g1023 435 Gene3D - 145 432 IPR029052 -
Cam04g1023 435 Gene3D - 53 144 - -
Cam04g1023 435 SUPERFAMILY Metallo-dependent phosphatases 147 415 IPR029052 -
Cam04g1023 435 Pfam Iron/zinc purple acid phosphatase-like protein C 357 418 IPR025733 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1023 K22390 - - csv:101212320 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1023 Cam-Chr4:24403136 Cam06g1292 Cam-Chr6:24368702 3.20E-84 dispersed
Cam05g0404 Cam-Chr5:3704880 Cam04g1023 Cam-Chr4:24403136 3.20E-75 transposed
Cam05g1608 Cam-Chr5:22833227 Cam04g1023 Cam-Chr4:24403136 4.60E-144 transposed
Cam06g0811 Cam-Chr6:11185423 Cam04g1023 Cam-Chr4:24403136 2.70E-80 transposed
Cam04g1023 Cam-Chr4:24403136 Cam08g1937 Cam-Chr8:25307450 6.90E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1005 . . Bda01g00326 . . . . . . . . Cma07g00857 Car03g01049 . . Cpe10g00278 . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 . . Cone13ag1189 Cone19ag1172 Lsi01g01228 Csa06g02677 Chy08g00933 . . . . . Bpe04g00752 . . . . Cmo03g01151 Cmo07g00889 . . . . . Cpe19g00466 . . . . . . . . . . . . . . . . . Cme08g01204
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007159 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37