Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g1063 | ATGCGTGGCGCCTCTCGAGCTCCGAACCGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGGCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATCTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCCAGGAAATGTGGATAGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATACAAAAGTGGCTCTTTGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTAGATTATCCACAGAGAAGATACCGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTCGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCCAATGAGTTTCCTGGTGGAATGATGAAGATTATTCCTTCAGATGTCGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATGTTAACTTAAGACAGAGATGA | 1410 | 43.05 | MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFGGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDVNLRQR | 469 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24745653 | 24751824 | - | CaPI482276_04g010630.1 | Cam04g1063 | 125141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g1063 | 469 | Gene3D | - | 136 | 210 | IPR036388 | - | |
Cam04g1063 | 469 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cam04g1063 | 469 | FunFam | E2F transcription factor 1 | 136 | 209 | - | - | |
Cam04g1063 | 469 | Coils | Coil | 234 | 254 | - | - | |
Cam04g1063 | 469 | MobiDBLite | consensus disorder prediction | 83 | 137 | - | - | |
Cam04g1063 | 469 | Gene3D | - | 214 | 324 | - | - | |
Cam04g1063 | 469 | MobiDBLite | consensus disorder prediction | 443 | 469 | - | - | |
Cam04g1063 | 469 | SMART | E2F_TDP_2 | 142 | 207 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cam04g1063 | 469 | PANTHER | TRANSCRIPTION FACTOR E2F | 59 | 422 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER) | |
Cam04g1063 | 469 | Pfam | E2F transcription factor CC-MB domain | 223 | 323 | IPR032198 | GO:0046983(InterPro) | |
Cam04g1063 | 469 | Pfam | E2F/DP family winged-helix DNA-binding domain | 144 | 207 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cam04g1063 | 469 | SUPERFAMILY | E2F-DP heterodimerization region | 221 | 324 | IPR037241 | - | |
Cam04g1063 | 469 | CDD | E2F_DD | 223 | 324 | IPR032198 | GO:0046983(InterPro) | |
Cam04g1063 | 469 | SUPERFAMILY | Winged helix DNA-binding domain | 142 | 205 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g1063 | Cam-Chr4:24745653 | Cam06g1815 | Cam-Chr6:29218080 | 9.60E-10 | dispersed | |
Cam02g2314 | Cam-Chr2:35674984 | Cam04g1063 | Cam-Chr4:24745653 | 1.10E-138 | wgd | |
Cam04g1063 | Cam-Chr4:24745653 | Cam08g1910 | Cam-Chr8:25038891 | 2.00E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51781 | PF16421 | E2F_CC-MB | 4.70E-33 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g1063 | K06620 | - | csv:101212480 | 764.222 |