Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1066 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCCGATGCAGAGGTCATTTCTCTCTCTCCAAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTCGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGCCCTGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGTCGAGTTTTCTCCAGAGGTTTTGAGGTAAATTAA 537 42.83 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVISLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRGFEVN 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24799697 24804046 + CaPI482276_04g010660.1 Cam04g1066 125144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1066 178 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 173 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam04g1066 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cam04g1066 178 SMART c2h2final6 100 130 IPR013087 -
Cam04g1066 178 SMART c2h2final6 136 163 IPR013087 -
Cam04g1066 178 SMART c2h2final6 57 79 IPR013087 -
Cam04g1066 178 MobiDBLite consensus disorder prediction 23 42 - -
Cam04g1066 178 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cam04g1066 178 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cam04g1066 178 FunFam protein indeterminate-domain 12-like 36 106 - -
Cam04g1066 178 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Cam04g1066 178 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cam04g1066 178 Gene3D Classic Zinc Finger 45 132 - -
Cam04g1066 178 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1066 Cam-Chr4:24799697 Cam04g1313 Cam-Chr4:26921445 2.60E-80 dispersed
Cam04g1066 Cam-Chr4:24799697 Cam08g1994 Cam-Chr8:25730325 4.70E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51783 PF00096 zf-C2H2 0.0012 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1066 K25871 - csv:101210748 371.703