Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1070 ATGGCTCTCGTCCGCGATCGCCGCCACTTAAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCCCTCCCTCCCTCCTCCGCCCCCGCCCCTCCCGCCGCCCCCTCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGTGGCACCGTCTACAAAGTCCGCCACAAACGCACCTCCACTACTTACGCTCTCAAAGTCGTCCATGGAGACTGCGATCCCACCGTCCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTGCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCACTTTTGAAAAAGAATTCGACGTTGTCGGAATCGACGCTTGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAACCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCTGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGTAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGTGATATTTGGAGTTTGGGGCTTACTCTTCTCGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCTACGCTGCCGGAGAATGCGTCGGAGGAGTTTCGAAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCTAGCAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTGTGCAGGGAATCATCGAGATCCGATCGATTAATCGGCGGTGGATTGAAGGATTCCGAATCACTGGCAGTTTAA 1008 51.98 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPAPPAAPSAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDRLIGGGLKDSESLAV 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24856635 24857642 + CaPI482276_04g010700.1 Cam04g1070 125148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1070 335 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524(InterPro)
Cam04g1070 335 Gene3D Phosphorylase Kinase; domain 1 38 131 - -
Cam04g1070 335 CDD PKc_MAPKK_plant_like 50 312 - -
Cam04g1070 335 MobiDBLite consensus disorder prediction 23 46 - -
Cam04g1070 335 MobiDBLite consensus disorder prediction 23 41 - -
Cam04g1070 335 SMART serkin_6 51 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1070 335 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 44 316 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cam04g1070 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1070 335 FunFam Mitogen-activated protein kinase 2 132 323 - -
Cam04g1070 335 SUPERFAMILY Protein kinase-like (PK-like) 50 314 IPR011009 -
Cam04g1070 335 Pfam Protein kinase domain 53 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1070 335 Gene3D Transferase(Phosphotransferase) domain 1 133 323 - -
Cam04g1070 335 FunFam Mitogen-activated protein kinase kinase 30 127 - -
Cam04g1070 335 ProSiteProfiles Protein kinase domain profile. 51 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1070 Cam-Chr4:24856635 Cam07g1143 Cam-Chr7:25857310 4.50E-86 dispersed
Cam04g1070 Cam-Chr4:24856635 Cam11g0173 Cam-Chr11:3309926 1.80E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85130 PF00069 Pkinase 1.50E-65 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1070 K20604 - csv:101203133 595.89