Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1078 ATGGCAGTAGATGGCCGAAGAGGGCCAAACAGAAGCCTCGAGACCCTTCTCGACATCGACAAGAAGGCCGTTGCTGCAAGAACAGTAGCGCCAGCGCCAGCGCCGCAGCTACAAAAGTCAGTGCCAGGACAAGGCTTGGAATTCAACAACTTGTCATACAGTGTCTTAAAGAAGTATAAAAAAGATGGAGTTTGGATCAAAAGAGAAACTTATCTTTTGAATGACATCTCAGGACAGGCAATGCGAGGCGAAATCATGGCTATCTTGGGGCCAAGTGGTGCCGGGAAATCTACATTTCTTGATGCCTTGGCTGGTCGAATGGCGAAAGGAAGCCTCGAAGGATCGGTTAGGATCGATGGAAAGCCGGTGACTGCAAGTTATATGAAGATGGTTTCATCTTATGTTATGCAAGATGATCAACTCTTCCCAATGTTAACTGTGTTTGAGACCTTCATGTTTTCAGCTGAGGTTAGGCTTCCATCCTCTATTTCCAGGGAGGAGAAGAAGAATAGAGTTTATGAGCTTATTGATCAACTCGGTTTACAGAGTGCCATGCATACTTATATAGGTGATGAAGGGAGAAGAGGAGTTTCAGGAGGTGAACGAAGAAGGGTGTCTATAGGAATCGACATCATTCACAAACCATCTCTCTTATTTTTGGATGAGCCAACCTCAGGCCTTGATTCAACTAGTGCTTTCAGTGTAGTTGAGAAGGTGAAAGAGATTGCTCGAAATGGCAGTATTGTCTTAATGACAATTCATCAGCCTTCTTACAGAATTCAATTGCTACTTGATCGCATAACTGTTCTTGCCAGGGGAAAACTAATATATGTTGGAAGTCCATTAAACCTTTCTGCTCATCTCTCTGGATTCGGAAGGCCGGTACCGGATGGCGAAAATGGCATCGAATATCTATTGGATGTGATCAAGGAATATGATGAATCAACAGTGGGCTTGGAGCCTCTTGTTGCATACCAACGCCATGGCATCAAACCTGATCACATTGCAAAAACTCCTGTTCCGAAAACACCTCGAACTCCTTATAAAAAGACCACGGGGCCAGGCCCGGGACCGGGGCCAAAGTTCCTAAACCTTCGTAGTCAAGCATTCTCTATGACCTCAGGGCCTAACTCAAGCCAGTTTGATTCTGCATATGCATATGAAGACAATGAGGATGATGAATTTGATAGATCTCTTGAACGTAAATCTACCAAAACTTCAGTGAATAATCGTAGCAGTATTCATAATCCTCGTTTAGCTTCTGAATTTTACAAAGATTTGTCTGTTTGGGTGTATAATGGTGTTAAAAGAACTCCTCATCGATACCCGTCATGGACTCCGGCAAGAACGCCAGGACAAACACCAGCAAAAACTCCTATGTCTGGAGTTAGAAGTGGAATGGTTTCAAGCCATATATCATCATCTCATGCCAAAATACCTTCAGTCTTCAGCATGTCAATGGACTCTCATTTGCCTTCTTTCCAAGACTTCGAAATTGAGGAGGTTCTCGACGAGCCGGACCATGGTCCTAAATATGCAAATCCTTGGCTTCGTGAGGTCATTGTGCTTTCGTGGAGAACAATGCTCAATGTGGTCCGCACCCCAGAATTGTTTCTGTCGAGGGAGATTGTTTTGACAGTAATGGCATTGATTCTCTCCTCCATGTTCAAAAACCTCAGTCATGCTTCCTTTAGAGACATCAACAGGCTTCTCAACTTCTACATCTTTGCAGTTTGTCTCGTTTTCTTTTCATCAAACGATGCCGTCCCAACATTCATTCAAGAAAGGTTCATCTTCATTAGAGAGACTTCTCACAATGCATATCGAGCGTCGTCCTATGTCATCTCCTCCCTCATTGTTTATCTCCCATTTTTTGCCATTCAAGGCTTCACATTTGCTGCCATAACACAATTCTGGCTTCACTTGAAAAGCAACCTCTTCTTTTTCTGGATCACACTCTTTGCTTCACTCATTACAACGAATGCATACGTTATGCTTGTGAGCGCTCTCGTACCGAGTTATATCACAGGCTATGCAGTAGTTATCGCCACGACAGCCATTTTCTTCCTCACTTGTGGGTTCTTCTTGAAACGAACTCAAATACCAGTATATTGGAGGTGGCTCCATTACATCTCTGCAATAAAGTATCCATTTGAATCATTGTTGATCAATGAGTTCAAAGGTAAAAGATGCTATCAAGGCAATCCCAATGATCTTTCACCTGGACCTTTGGGAGATGTAAGGTTTAGCAGGTTGCACAATGTTTCCACCGATTTGAAACCCGGCTGCTTGCTGATCGGAGAAGACGTTTTGTTCTCAATGGACATTAATATGGAAAATATATGGTATGACATTGTGATCCTACTAGCGTGGGGAGTTCTTTACCGGCTGTTCTTCTATCTGGTTCTTAGATTTTACTCTAAGAATGAGAGAAAATGA 2439 43.13 MAVDGRRGPNRSLETLLDIDKKAVAARTVAPAPAPQLQKSVPGQGLEFNNLSYSVLKKYKKDGVWIKRETYLLNDISGQAMRGEIMAILGPSGAGKSTFLDALAGRMAKGSLEGSVRIDGKPVTASYMKMVSSYVMQDDQLFPMLTVFETFMFSAEVRLPSSISREEKKNRVYELIDQLGLQSAMHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAFSVVEKVKEIARNGSIVLMTIHQPSYRIQLLLDRITVLARGKLIYVGSPLNLSAHLSGFGRPVPDGENGIEYLLDVIKEYDESTVGLEPLVAYQRHGIKPDHIAKTPVPKTPRTPYKKTTGPGPGPGPKFLNLRSQAFSMTSGPNSSQFDSAYAYEDNEDDEFDRSLERKSTKTSVNNRSSIHNPRLASEFYKDLSVWVYNGVKRTPHRYPSWTPARTPGQTPAKTPMSGVRSGMVSSHISSSHAKIPSVFSMSMDSHLPSFQDFEIEEVLDEPDHGPKYANPWLREVIVLSWRTMLNVVRTPELFLSREIVLTVMALILSSMFKNLSHASFRDINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLIVYLPFFAIQGFTFAAITQFWLHLKSNLFFFWITLFASLITTNAYVMLVSALVPSYITGYAVVIATTAIFFLTCGFFLKRTQIPVYWRWLHYISAIKYPFESLLINEFKGKRCYQGNPNDLSPGPLGDVRFSRLHNVSTDLKPGCLLIGEDVLFSMDINMENIWYDIVILLAWGVLYRLFFYLVLRFYSKNERK 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24957291 24961019 - CaPI482276_04g010780.1 Cam04g1078 125156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1078 812 Gene3D - 45 291 IPR027417 -
Cam04g1078 812 MobiDBLite consensus disorder prediction 447 467 - -
Cam04g1078 812 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 46 800 IPR050352 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cam04g1078 812 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam04g1078 812 Pfam ABC-2 type transporter 519 726 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cam04g1078 812 SMART AAA_5 82 282 IPR003593 GO:0016887(InterPro)
Cam04g1078 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 287 IPR027417 -
Cam04g1078 812 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 297 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam04g1078 812 Pfam ABC transporter 73 225 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam04g1078 812 FunFam ABC transporter G family member 6 61 288 - -
Cam04g1078 812 CDD ABCG_EPDR 43 279 - -
Cam04g1078 812 MobiDBLite consensus disorder prediction 443 467 - -
Cam04g1078 812 MobiDBLite consensus disorder prediction 392 412 - -
Cam04g1078 812 MobiDBLite consensus disorder prediction 334 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1078 K05681 - - csv:101210003 1443.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1864 Cam-Chr1:32179059 Cam04g1078 Cam-Chr4:24957291 5.10E-159 dispersed
Cam04g1078 Cam-Chr4:24957291 Cam09g2069 Cam-Chr9:35258877 1.00E-123 dispersed
Cam04g1078 Cam-Chr4:24957291 Cam10g2042 Cam-Chr10:34233174 5.30E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00180 . . . . . . . . Car18g00069 Cpe09g01109 . Bhi08g01311 . . . . . . Cla04g01036 Cam04g1078 Cec01g1592 Cco01g1641 Clacu04g1106 Cmu04g1089 Cre01g1390 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012739 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28