Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1088 ATGGGGAGCAGCGACGACTATAAATTCATGGAGATTAGAGATGCTATTGCCTCCATAAACCAGAAGGTTAACCTTATTGGCGTCATCATCGAGTTCGGTTTCCCCAGGCGAACGAAGGGCACTGATTGCTTTTGTGCTGTAAAAATCGTTGACCAATCTCATCAAAAACCTGGAATTACTGCAAATATTTTTGCTGAAAGTTTGGAAAAGCATCCCCATGTTGCTTCAGCAGGAGATATCATTGAACTTTCGCATGTTACGATGAAAACTCATCAGGGGGAAATATATGCTGTCTTCAATAAGAAGTTTTCTTCATTTGCTTTGTATGAAGGAAAAGATGGATCGGGCTTTCTACCGTATGATGTATCACCAAAATTTCGATGCAGAGATCTTGATAAAAAGTTTATTTTGAGTCTGAGGGATTGGCTGGTTGGTTTTGAACTTGATGAAGGATCAACCAACTTTTCATTTGTGAGAGATTTGAAGGAAAGCGAACATGTAAATTTGATCGGCAAGATTGTCTACATGTGTGAGGATGCTAATAATGGGACTCTGGCTTTTGTTTGGGATGGAACTGATGCTCAACCGATTAGCATTGACACAAAGCATGACCCAGGGATTGAGAAGCAGAGTTTATCCATGCTCAACACTGGCAAATGGATGAAATTTATGAACGTCTTATGTGAAATGCAAGTTGGATCTTTCCAAATTGCAGTGAAAACATTTTCAAAGCTTCGTTATACATCGAATGAAGATAATGCCATACAATTGCGCCAAAGATCATATGAGGAGCGGTTAGCATCAGTTTTGGGGAGAATTCCTTTTTGGAGCTTTCCTTCACCTTCACCCATTACAGAGGTTGATCACAATAATGAACCATTTGCCACATTGATGGATGTATTGACATATTCAAAGGTGACTGCAAAATTCAAATGTATAGTGCGAGTCATAGCAATATATCCATTACAGGCCAAGGACTTCCGCTCTCCTGAAGGGACTTACCGGGTTAGGCTGTGCCTAGAAGATCCAACTGCAAGAATCCATGCCCTATTATATGCGGAGGATGGATACAAATTCTTTGGTGGCTATCCGTCGATTGATACTTTAACGAGGAAACGAAACAAGCTACTTGGGGTTTCAGCAAGTGAGAAAAATGAGGCCAGTAGAAGAAATCCTCCATGGGTGCAGTGCTGCTTGAAATCTTATTATCTTAATAAACAGGACGTATGGGGAAGTAGACAGTACAGAATATTCGGCACTCGGCTGATAGCGATTATGCTGTTGTTGAAAAGAATGCCAAGTGACCAAACTGGGAAAATGAACTTGTTTTTGGAACGTTTGAGTTGA 1347 40.61 MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGTDCFCAVKIVDQSHQKPGITANIFAESLEKHPHVASAGDIIELSHVTMKTHQGEIYAVFNKKFSSFALYEGKDGSGFLPYDVSPKFRCRDLDKKFILSLRDWLVGFELDEGSTNFSFVRDLKESEHVNLIGKIVYMCEDANNGTLAFVWDGTDAQPISIDTKHDPGIEKQSLSMLNTGKWMKFMNVLCEMQVGSFQIAVKTFSKLRYTSNEDNAIQLRQRSYEERLASVLGRIPFWSFPSPSPITEVDHNNEPFATLMDVLTYSKVTAKFKCIVRVIAIYPLQAKDFRSPEGTYRVRLCLEDPTARIHALLYAEDGYKFFGGYPSIDTLTRKRNKLLGVSASEKNEASRRNPPWVQCCLKSYYLNKQDVWGSRQYRIFGTRLIAIMLLLKRMPSDQTGKMNLFLERLS 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25016528 25025113 - CaPI482276_04g010880.1 Cam04g1088 125166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1088 448 CDD hPOT1_OB1_like 7 142 - -
Cam04g1088 448 PANTHER PROTECTION OF TELOMERES 1 7 203 IPR028389 GO:0000723(InterPro)|GO:0000783(PANTHER)|GO:0010521(PANTHER)|GO:0016233(PANTHER)|GO:0032210(PANTHER)|GO:0043047(InterPro)|GO:0051974(PANTHER)|GO:0098505(PANTHER)
Cam04g1088 448 SMART Telo_bind_a_2 9 144 IPR011564 GO:0000723(InterPro)|GO:0000781(InterPro)|GO:0003677(InterPro)
Cam04g1088 448 Pfam Telomeric single stranded DNA binding POT1/CDC13 9 143 IPR011564 GO:0000723(InterPro)|GO:0000781(InterPro)|GO:0003677(InterPro)
Cam04g1088 448 Gene3D - 8 147 IPR012340 -
Cam04g1088 448 SUPERFAMILY Nucleic acid-binding proteins 8 146 IPR012340 -
Cam04g1088 448 SUPERFAMILY Nucleic acid-binding proteins 159 232 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1088 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g195 Blo04g00855 . . . . . . . . . . . . . . Cpe20g00155 . . . . . . . . . . . . . . . Cone2ag0767 . . . Lsi02g00236 Csa01g00718 . . . . . . . Bpe15g00507 Bma03g00921 . . . . . . . . . . . . . . . . . Cla04g01043 Cam04g1088 Cec01g1601 Cco01g1649 Clacu04g1114 Cmu04g1097 Cre01g1396 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008940 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 2 1 34