Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1093 ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCGTTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTCCAAAATCATAAAGCTAGAGAACGGCAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCGACTCCCGATGCCGAAATCCTCGAAAGGAAAGATTCAGGGTCGGGCAGAACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCACCAAATAAGGAATAACAACACAACCAACAACAACAACTTTGCTGAAAAAAATACCAATAACATCAACAACAATATTAACAATTCAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTACGTGGTGGCGGTGGCGGTGGCGGCGGCAGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACTACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAATTAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGCGACACAAGAAATGGTGAGACTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1215 45.35 MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTPDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTTNNNNFAEKNTNNINNNINNSASLQLMHCPAAALRGGGGGGGGSGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELELEEEEEGGGGGGGGGGCGESETLQLFPLCSDTRNGETIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25090649 25093690 + CaPI482276_04g010930.1 Cam04g1093 125171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1093 404 FunFam WUSCHEL-related homeobox 4 81 148 - -
Cam04g1093 404 SMART HOX_1 79 146 IPR001356 GO:0003677(InterPro)
Cam04g1093 404 Pfam Homeodomain 82 141 IPR001356 GO:0003677(InterPro)
Cam04g1093 404 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 76 400 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cam04g1093 404 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cam04g1093 404 CDD homeodomain 83 143 IPR001356 GO:0003677(InterPro)
Cam04g1093 404 Gene3D - 81 148 - -
Cam04g1093 404 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677(InterPro)
Cam04g1093 404 Coils Coil 319 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2067 Cam-Chr1:33723144 Cam04g1093 Cam-Chr4:25090649 1.50E-22 dispersed
Cam02g2120 Cam-Chr2:33962897 Cam04g1093 Cam-Chr4:25090649 2.30E-23 dispersed
Cam03g0161 Cam-Chr3:2509282 Cam04g1093 Cam-Chr4:25090649 1.60E-25 dispersed
Cam04g1093 Cam-Chr4:25090649 Cam08g2084 Cam-Chr8:26379642 1.30E-23 dispersed
Cam01g2401 Cam-Chr1:35953333 Cam04g1093 Cam-Chr4:25090649 1.00E-14 transposed
Cam04g1093 Cam-Chr4:25090649 Cam06g1576 Cam-Chr6:27244752 6.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51787 PF00046 Homeodomain 1.70E-19 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1093 - - - 0.0