Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1097 ATGTCCAGTGGTCAGTCTGACGATGCAGCTGAAGGGTCTACTTCATCGAGGAGCAGTAAATTAATGGAGGTTTCTTCGCCTGATAAGCTGCCGTCTCGCTCCCGAACGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCCAATCCTACTGCAGGCGAGTTAATGGAGCCATCAGATTCAGTTTCTAGCAGAGATGCTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAACTGAGTGCTAGAGAGGATCCTGAGGCAGCTCAGATTGAGGCTGTGAAGCAGATTAGTTTGGGGTCATGTGATCCTGATAACACACCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATTAATAAAGCTGCTGATGCTAACTTGTTGAAACTTGAACAGACAGCATTGGAGATGGCTATCAAAATGGGGACGGAATCCCCAATTTCTGTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTAGGCGATCCTGAAAAGATGTTGAGAAAATGGAGAAATCTTAGTTACGGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAGGGACCACAGTACACAGGTTCTGATGATGTGGCGATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCTTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCACTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCAAAGTTTCGGAATCTCAGTGCCACAAAGGAATATGATTCTCCCAATGTTGACAAGGGGCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAAAAGCTTCATGACGTGTTACTTGAAAGTGGTGTGGTTGCTCCCCCTAACTTGTTTACTGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGAAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGAATGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGCACCTTAAACCTCTGGAATTTAACCTTTCTCTTGATCCAAGAGAAGCAGCCGGACAACCTATAGCCTTACCTTTTGAGGTAACACCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGTACCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACTGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGACGCTACTCTTTATGAGCAGCGTGGAAGTGGAGATAGGGAGCATGATGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCAGATAGATCAGTTGGTAACGAAAGCACAAAATCCGATATTACTCTTGATGATGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGAGAGCGTATTGGGCTTGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGCGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACGCCTGTTGTTGTACATCGTGATTTGAAGTCCCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCTAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCTGGAACTGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGTGACGTTTATAGTTATGGAGTCATACTATGGGAGCTGTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTAGATCCTGCCATTGCTGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCTGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCGAGACCAAATGCTCCTGCAGGTAGTAGTCGTGACAAGGCTCGATTATTGCAAGTTGCTGAAGACCCATCAGGCTAG 3006 45.54 MSSGQSDDAAEGSTSSRSSKLMEVSSPDKLPSRSRTTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGELMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMGTESPISVNSYLVRKLAVLVSDHMGGPVGDPEKMLRKWRNLSYGLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKFRNLSATKEYDSPNVDKGPSRDFASKSNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKNDPRPANFLPPLPQPRMHSRASPTHGQQLHLKPLEFNLSLDPREAAGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADATLYEQRGSGDREHDACGENSEGERISDRSVGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNAPAGSSRDKARLLQVAEDPSG 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25112975 25125745 - CaPI482276_04g010970.1 Cam04g1097 125175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1097 1001 MobiDBLite consensus disorder prediction 41 78 - -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 1 34 - -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 662 689 - -
Cam04g1097 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 CDD STKc_MAP3K-like 718 964 - -
Cam04g1097 1001 Gene3D Transferase(Phosphotransferase) domain 1 791 976 - -
Cam04g1097 1001 Pfam Protein tyrosine and serine/threonine kinase 713 964 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 MobiDBLite consensus disorder prediction 662 695 - -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 968 1001 - -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 1 106 - -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 370 396 - -
Cam04g1097 1001 ProSiteProfiles Protein kinase domain profile. 712 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 ProSitePatterns Protein kinases ATP-binding region signature. 718 739 IPR017441 GO:0005524(InterPro)
Cam04g1097 1001 SMART serkin_6 712 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 SUPERFAMILY Protein kinase-like (PK-like) 693 962 IPR011009 -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 510 558 - -
Cam04g1097 1001 FunFam Serine/threonine-protein kinase CTR1 791 974 - -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 87 106 - -
Cam04g1097 1001 PRINTS Tyrosine kinase catalytic domain signature 825 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 PRINTS Tyrosine kinase catalytic domain signature 786 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 PRINTS Tyrosine kinase catalytic domain signature 891 913 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 PRINTS Tyrosine kinase catalytic domain signature 935 957 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 PRINTS Tyrosine kinase catalytic domain signature 872 882 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1097 1001 PANTHER SERINE-THREONINE PROTEIN KINASE 58 965 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam04g1097 1001 MobiDBLite consensus disorder prediction 510 528 - -
Cam04g1097 1001 FunFam Serine/threonine-protein kinase isoform 1 703 790 - -
Cam04g1097 1001 Pfam Ethylene-responsive protein kinase Le-CTR1 147 350 - -
Cam04g1097 1001 Gene3D Phosphorylase Kinase; domain 1 705 789 - -
Cam04g1097 1001 MobiDBLite consensus disorder prediction 368 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1097 Cam-Chr4:25112975 Cam05g1951 Cam-Chr5:28405675 1.00E-189 dispersed
Cam04g1097 Cam-Chr4:25112975 Cam11g1485 Cam-Chr11:27592838 4.10E-119 transposed
Cam04g1097 Cam-Chr4:25112975 Cam10g1900 Cam-Chr10:33075448 4.10E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85132 PF07714 PK_Tyr_Ser-Thr 5.30E-67 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1097 - - - 0.0