Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1119 ATGCCATCTGATGTGGAAATTTTGGGATCGGAATCAGCCACGATAATATTAAGTATCACGATGACTATCAAAACTCCTGCAACACCAGCTTCGAAAACAGAGAGGACACCAGCATCAACACCCGGAGGACCTCGATCTAAGGAAGAGAAGATCGTTGTTACTGTGCGGTTAAGGCCTCTGAGTAAAAAGGAGCAGCAAGCGAAAGATCAAATGGCATGGGAGTGCATTGATGATCATACCATTGTATACAAACCTCAGCCTCAGGAACGTCAAACTCAACCAGCCTCGTTTACATTTGATAAAGTTTTCAGTCCCACTTCTTTGACTGAGGCAGTATATGAGGAAGGAGTAAAGAATGTTGCCTTATCTGCCCTAATGGGCATCAATGCCACCATATTCGCCTATGGGCAAACTAGTAGTGGAAAGACATTTACAATGAGGGGGATAACTGAGAAAGCTGTTAATGATATCTACAAACATATTAGTAATACACCCGAGAGAGATTTTACAATAAGAATTTCTGGACTGGAAATATACAATGAGAATGTTAGGGATCTACTGAATACAGAATCAGGCCGGAATCTAAAGCTTCATGATGACCCAGAGAAAGGTACAATGGTTGAGAAATTAGTAGAGGAAACGGCAAATAATGATCAACATTTGAGGCATTTGATTAGCATCTGTGAGGCTCAAAGACAAGTTGGTGAAACTGCCTTGAATGACTATAGCTCTCGGTCACACCAGATCATAAGGCTGACAATTCAAAGTACCCTACGAGAAAATTCAGATTGCGTTAGGTCTTTTGTGGCAAGCTTGAATTTTGTTGATCTAGCTGGAAGTGAGAGAGCTTCACAGACACATGCTGATGGTGCTAGGCTAAGAGAAGGCTGTCATATTAACCTTAGTTTGATGACGCTCACAACTGTGATCAGAAAGCTAAGTCTTGGAAAGAGAAGTGGCCATATACCTTATAGAGACTCAAAGCTCACCCGCATATTGCAGCACTCCCTTGGTGGAAATGCACGAACCGCCATTATTTGCACTTTGAGTCCAGCACTGACTCATGTTGAACAATCGCGGAACACTTTGTACTTTGCCACCCGGGCAAAGGAAGTGACTAATAACGCCCAAGTCAATATGGTTGTATCGGACAAACAATTGGTCAAACATTTACAAAAGGAAGTTGCCAGGCTAGAAGCAGAACTGCGCACTCCTGATCCAAAAAGGGAGAAAGATTTAAAAATCCAGCAGATGGAAATGGAGATTGAAGAATTAAAACGACAAAGAGACCTTGCTCAATCCCAGGTTGATGAGCTCCGCAGAAAACTTGAGGAAGACCAGCAGGGTTCCAACCCAATTGAATCTGCCCGTCCTCCAGTGAAGAAGTGTTTGTCCTTTACTGGTACATTGCCTCAGAAACTCGACAGCAAGGACCTTGGCCGTGGTATGATATTAAGGCAGTCTATGATGAGACAATCATCGACTGCTCCCTTCACACTTATGCATGAAATTCGCAAGCTGGAACATCTCCAGGAGCAGCTTGGGGAGGAAGCTAATAGAGCCCTCGAAGTATTGCAAAAGGAGGTGGCTTGTCACAGACTGGGGAACCAAGATGCAGCAGAAACAATTGCCAAACTACAAGCTGAAATAAGAGAAATGAGATCAGTCCGCTCAGAACCAAAAGAGGTTGAGGTTGGGAGCACTATTGCTACTAACCAGAGTGTAGGTGCTAATCTTAAGGAAGAGATAACACGGCTTCATTCTCAAGGTAGCACCATTGCCAATTTAGAGGAGCAGCTTGAAAATGTTCAGAAGTCTATTGACAAGTTGGTAATGTCTCTACCAAGCAATTATCAGCAGTTCATGAGCAGTGAATCAACCCCCAAACAAAAAAGTTATACCAAAAAGAAGAAATTGCTTCCTTTGGCCTCAAGTAATGTTACCAACCGGCAAAACTTTTTACGATCGCCATGCTCCCCTTCAACAACTCCCCAGCAAGTACTGGAGTCCGATACTGAAAATAGAGCTCCTGAGAATGATGATGTCATCTCATCTGAGATTCTGCTCGAGTCTGAGAAAGAGACTCCAACAAAGAGTGAAGAAGGTGGAGATGTCTCATCAAAGGAGAACACTCCTTGTTATCGAAGATCAAGTTCTGTGAACATGAAGAAGATGCAAAAGATGTTCCAAAATGCAGCAGAAGAAAACGTAAGAAGCATAAGAGCATATGTGACAGAATTGAAAGAACGTGTGGCTAAACTGCAGTACCAAAAACAGCTACTTGTTTGTCAGGTCCTTGAGCTGGAAGCAAATGAAGCAGCTGGCAACAAATTAGATTGTGATGAAAACACATTTGAGCAAGATGACGACCAAGTTCCGTGGCATGTAACTTTCAGGGAGCAAAGGCAGCAGATTATTGAGTTATGGGATGCTTGCCATGTCTCCATTATTCACAGATCTCAGTTCTACTTGTTATTCAAGGGCGACGAGGCTGATCAGATTTACCTGGAAGTAGAGATGAGGCGCTTAACATGGCTGCAGGATCACCTAGCGGAATTTGGCAATGCTAGTCCAGCTCACTTTGGGGACGAGCCAACAATCTCTCGCTCGTCAAGCATGAGGGCATTGAGACGTGAAAGAGAGTTTCTTGCAAAGAGATTAACTTCACGATTGTCAGCAGAAGAAAGAGATGCCTTGTACATTAAATGGGAAGTACCACTTGAAGGGAAACAGAGGAAAATCCAATTTGTAAACAAGCTCTGGACAAATCCTCACGACCCCAAGCATATTCAGGACAGTGCAGAGATAGTGGCAAAGCTTGTTGGGTTCTGTGAAGGAGGCAACATGTCCAGGGAGATGTTTGAACTCAATTTTGTTGTTCCTTCCGACAAAAGACCATGGATCATGGGATGGAACCCAATTTCAAACCTTCTTAATTTGTGA 2943 43.29 MPSDVEILGSESATIILSITMTIKTPATPASKTERTPASTPGGPRSKEEKIVVTVRLRPLSKKEQQAKDQMAWECIDDHTIVYKPQPQERQTQPASFTFDKVFSPTSLTEAVYEEGVKNVALSALMGINATIFAYGQTSSGKTFTMRGITEKAVNDIYKHISNTPERDFTIRISGLEIYNENVRDLLNTESGRNLKLHDDPEKGTMVEKLVEETANNDQHLRHLISICEAQRQVGETALNDYSSRSHQIIRLTIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSLGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPKREKDLKIQQMEMEIEELKRQRDLAQSQVDELRRKLEEDQQGSNPIESARPPVKKCLSFTGTLPQKLDSKDLGRGMILRQSMMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSEPKEVEVGSTIATNQSVGANLKEEITRLHSQGSTIANLEEQLENVQKSIDKLVMSLPSNYQQFMSSESTPKQKSYTKKKKLLPLASSNVTNRQNFLRSPCSPSTTPQQVLESDTENRAPENDDVISSEILLESEKETPTKSEEGGDVSSKENTPCYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEAAGNKLDCDENTFEQDDDQVPWHVTFREQRQQIIELWDACHVSIIHRSQFYLLFKGDEADQIYLEVEMRRLTWLQDHLAEFGNASPAHFGDEPTISRSSSMRALRREREFLAKRLTSRLSAEERDALYIKWEVPLEGKQRKIQFVNKLWTNPHDPKHIQDSAEIVAKLVGFCEGGNMSREMFELNFVVPSDKRPWIMGWNPISNLLNL 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25294441 25298925 - CaPI482276_04g011190.1 Cam04g1119 125197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1119 980 MobiDBLite consensus disorder prediction 26 49 - -
Cam04g1119 980 MobiDBLite consensus disorder prediction 436 459 - -
Cam04g1119 980 MobiDBLite consensus disorder prediction 673 705 - -
Cam04g1119 980 MobiDBLite consensus disorder prediction 642 719 - -
Cam04g1119 980 ProSitePatterns Kinesin motor domain signature. 270 281 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cam04g1119 980 Coils Coil 536 556 - -
Cam04g1119 980 Coils Coil 381 401 - -
Cam04g1119 980 MobiDBLite consensus disorder prediction 26 40 - -
Cam04g1119 980 Pfam Domain of unknown function (DUF3490) 798 960 IPR021881 -
Cam04g1119 980 ProSiteProfiles Kinesin motor domain profile. 50 372 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam04g1119 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 406 IPR027417 -
Cam04g1119 980 Gene3D Kinesin motor domain 43 403 IPR036961 -
Cam04g1119 980 Coils Coil 408 449 - -
Cam04g1119 980 PANTHER CENTROMERE PROTEIN E 46 958 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cam04g1119 980 SMART kinesin_4 48 380 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam04g1119 980 MobiDBLite consensus disorder prediction 642 672 - -
Cam04g1119 980 Coils Coil 586 613 - -
Cam04g1119 980 Coils Coil 507 527 - -
Cam04g1119 980 FunFam Kinesin-like protein 44 403 - -
Cam04g1119 980 Pfam Kinesin motor domain 56 372 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam04g1119 980 CDD KISc_CENP_E 50 372 - -
Cam04g1119 980 PRINTS Kinesin heavy chain signature 271 289 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam04g1119 980 PRINTS Kinesin heavy chain signature 237 254 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam04g1119 980 PRINTS Kinesin heavy chain signature 322 343 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam04g1119 980 PRINTS Kinesin heavy chain signature 127 148 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1119 K11498 - - csv:101215425 1813.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0492 Cam-Chr2:5578170 Cam04g1119 Cam-Chr4:25294441 1.30E-165 dispersed
Cam04g1119 Cam-Chr4:25294441 Cam11g0011 Cam-Chr11:1664200 3.20E-289 dispersed
Cam04g1119 Cam-Chr4:25294441 Cam08g1924 Cam-Chr8:25183213 1.70E-165 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001397 1 1 3 3 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 3 4 2 1 10 2 2 73