Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1123 ATGGATTTCAAGAGAACCCCTTTTCTTCTTATCATCATCTTCATTATCTTAACTCCCCAAACTCTGTCTTCAGACCAAAACTTTGAAGCTTGTGCTCCAAAATCCTGTGGGAAAGGTCCCAATATAAGCTACCCTTTTTGGATAGCTACTTCACACAGCCCCTTCTGTGGATTACCAAGCTTCGATATTGCCTGCAAAGATGAAAACCCAATTATCAGAATTTCAGAAGATGATTATATTATCAGAGACATTTTCTACAAAAACCATTCTTTTCTTTTGAAAAATGCTGCGGTTGACGATGAGAACTGCACAACTCCTCTTCATAATTTCAGCCTCCACGGAACCCCCTTCAATTACAGTTCAGTTCCTTATAATTTCTTCTTCTTCTACAGCTGTACTTCCCTTCCTTCCAATTATAGCTTCCCAATTAATTGTTCTAGCACAAGCAAACTCAATTCTTTTGCTGCTTTTAATGATGGATCCTTGGAGTCCATGAACTCAGCTTACCATTCTTGTCAATCCTCGGTTAAGGTGCCTGTGCACCTCAGTAATAACGAGGAAAATAGTTTTCCTGGGTTGTACAGGAAGAGTTACTCTGATGTCTTGAAGAACGGTTTCAGTTTAAATTGGAGGAGTGCCCAAAATTGTAGCAACTGTGAGACAAATGGTGGCCGATGTGGGATCAAAAGCAACAAGTTTGTTTGCTTTTGTTCTGATGGATCTCATCTCCAAACCTGCAAAGAGGGAAAACTTGATATATGGAAAAAGGCATTAATAGGTGCATCTCCTTTGGGAATTACCATCATTCTGATAATCTCTGTTATCATCATCTCCATCTACTACACAAGGAAAAGCTTATCAAACAAAGACAAAATTGAGGAAAGTATAAGGAGTTATTCCACACAAACACCCAAGAGATATAGTTACTCAAAGCTGAAGAAAATCACAGACTCCTTCAAGAACAAACTTGGTCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCCGACGGGCGCGATGTAGCTGTGAAACTTTTGAATGAGTCCAGTGAAAATGGCCAAGATTTTATGAACGAGGTTGTTAGCATCACCAGAACTTCACATGTAAATATAGCTTCACTCTTAGGTTTCTGCTACGAGAGGAAGAAAAGAGCTTTGATTTATGAATATATGCCTAGAGGGTCATTGGATAAGTATATATCACACCAAGGGCCACGGAGAAACAATGTTGAGTTGGATTGGAACACACTTTATAGCATCATTATTGGCGTGGCACGAGGCTTAGAGTACTTGCATCGTGGTTGCATCACAAGGATTTTGCATTTTGACATCAAACCGCACAACATACTTTTGGATAGTGATTTTTGTCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGCAAGGACAAAGAAAGTCATGTGTCAATGACAGGCGTAAAAGGGACGACAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTACAGCTACGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCCAATGACAATGATGGAGTGGAGCAGAGGAGTGAAGAGTACTTTCCTGATTGGATATATAAAGATCTTACACAAAGTGAAATAGATGGAGGGTGTTGGTGGGGAAGCACGGAGGAAGAAGAAGAAATGGCAAGAAAAATGATAATTGTGGGGCTGCATTGTATTCAAACATTGCCCGACGACAGGCCGTCGATGACCGATGTGGTTGTGATGTTGGAAGGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAAATTATTGGAACCTCCAGCCATTAAGCAGCCCCAACCTTCTTCCTCTTCATCCAACTGGATTTCTAATGATAGTTTGATATTCTAG 1908 40.67 MDFKRTPFLLIIIFIILTPQTLSSDQNFEACAPKSCGKGPNISYPFWIATSHSPFCGLPSFDIACKDENPIIRISEDDYIIRDIFYKNHSFLLKNAAVDDENCTTPLHNFSLHGTPFNYSSVPYNFFFFYSCTSLPSNYSFPINCSSTSKLNSFAAFNDGSLESMNSAYHSCQSSVKVPVHLSNNEENSFPGLYRKSYSDVLKNGFSLNWRSAQNCSNCETNGGRCGIKSNKFVCFCSDGSHLQTCKEGKLDIWKKALIGASPLGITIILIISVIIISIYYTRKSLSNKDKIEESIRSYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSTVYKGKLPDGRDVAVKLLNESSENGQDFMNEVVSITRTSHVNIASLLGFCYERKKRALIYEYMPRGSLDKYISHQGPRRNNVELDWNTLYSIIIGVARGLEYLHRGCITRILHFDIKPHNILLDSDFCPKISDFGLAKQCKDKESHVSMTGVKGTTGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNDNDGVEQRSEEYFPDWIYKDLTQSEIDGGCWWGSTEEEEEMARKMIIVGLHCIQTLPDDRPSMTDVVVMLEGSVDGLQIPPKPKLLEPPAIKQPQPSSSSSNWISNDSLIF 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25320974 25323321 + CaPI482276_04g011230.1 Cam04g1123 125201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1123 635 SMART serkin_6 317 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1123 635 Gene3D Phosphorylase Kinase; domain 1 289 391 - -
Cam04g1123 635 Gene3D Transferase(Phosphotransferase) domain 1 392 602 - -
Cam04g1123 635 ProSiteProfiles Protein kinase domain profile. 317 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1123 635 Pfam Wall-associated receptor kinase galacturonan-binding 31 93 IPR025287 GO:0030247(InterPro)
Cam04g1123 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1123 635 PANTHER RUST RESISTANCE KINASE LR10-RELATED 205 614 IPR045874 GO:0004672(InterPro)
Cam04g1123 635 Pfam Protein tyrosine and serine/threonine kinase 319 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1123 635 FunFam PR5-like receptor kinase 392 606 - -
Cam04g1123 635 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524(InterPro)
Cam04g1123 635 MobiDBLite consensus disorder prediction 616 635 - -
Cam04g1123 635 MobiDBLite consensus disorder prediction 603 635 - -
Cam04g1123 635 Pfam Wall-associated receptor kinase C-terminal 153 240 IPR032872 -
Cam04g1123 635 FunFam serine/threonine-protein kinase PBS1-like 285 391 - -
Cam04g1123 635 CDD STKc_IRAK 323 596 - -
Cam04g1123 635 SUPERFAMILY Protein kinase-like (PK-like) 292 594 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1123 Cam-Chr4:25320974 Cam06g1607 Cam-Chr6:27529374 2.60E-90 dispersed
Cam04g1121 Cam-Chr4:25310468 Cam04g1123 Cam-Chr4:25320974 1.70E-158 proximal
Cam04g1122 Cam-Chr4:25314128 Cam04g1123 Cam-Chr4:25320974 5.60E-189 tandem
Cam04g1123 Cam-Chr4:25320974 Cam04g1124 Cam-Chr4:25325427 1.70E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85137 PF00069 Pkinase 1.70E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1123 - - - 0.0