Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1124 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCTTTCTTCTTCACAATCCTGTTGTTTGATCTTCAGCTCTGTTTCGGCGATGTCGCCAGCGAGGAATTTAAAGCTTGCGGCGTCAATTACAACTGCGGAGATTTGGTTAACATCTCATATCCGTTTTGGGGGAATGAGCGGCAGGAGTTTTGTGGTCGGCGAGAATTTGGACTGAATTGCAAAGACAACAAAACCACCACGATTCAAATCAATTCCATGGAGTATAACGTCGTGAACATCAGCCAATTGGATCATAGAATGACGATCGCAAGATCAGACTTGTACGATGATTACTGCCCTAACAATCAAATCGAAGCGGCGACGTTGGATTATAGTCCATTCACGTATTCTTCAAATGATCTGAATCTGTCTGTGTGGTACGATTGTCCGGCGCTACAGGGGATTCCGCGGGATTTCACATTTGAGTGCGGATCAGAAGGGGAAAAAAGAGGGAGAGCGAATTATGCTTTAGAAGAGAGGGCGATGAATTGGAGTTCATATATGGGAGATTGTAGAATGAAAATCGAAGTGACGATTATGATGGATGTATTGAAAGAAGGGAAAATGAACAGAACGATGGTGGTGGAAAGGGGAGTGAAAGAAGGGTTTGAAGTGGAATACGGTGATTATCATACGTTAGCGTGTGAGGGATGCAAGGAATACGGCGGCGCGTGTGGTGGAAACGCGACTCAAGAGTTTCGGTGCATCTGTGGAAATGGTGATGCACATCTTTACGTTTGCACGTCTCCGCCTTCATCTGGAGCACGATATGCAAATGTTAGATGGAAGCGGAAGCTGGTCGTTGCAGGAACAATATCTTCGGCCGGCTTCATTTTAATAATCTCTATTATCATCTTCATCTACTCCAAGAGAATAAGAATCTCAAACAAAGACAAAATCGAGGAAATTATTAAGAGATATTCCACACAGACACCCAAGCGATACAGTTACTCCAAATTAAAGAAGATCACGGACTCTTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATTGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTCACCCTCTTAGGTTTCTGCTACGAGCAGAACAAGAGGGCTTTGGTTTATGAATATATGCCTAAGGGGTCATTGGATAAGTACATATCCCACAACAGACTGCAAGAAAATGATATGAAATTGGATTGGAACACACTCTACAATGTTGTTATTGGTGTGGCACGAGGCTTAGAGTACTTGCATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCACACAACATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGGCTTGCCAAGCAATGCAGGCCAAAAGAAACTCATGTATCGATGACAGGTGTGAAAGGGACGGTAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAACCCCAATTCCAATGACAGTGATGGAGTGGAGCAGGGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTTACACAAAGTGAAATAGATGGAGGGTGTTGCTGGGGAAGCACAGAGGAAGAAGAAGAAATGACAAGAAAAATGATGATTGTGGGTTTACATTGTATTCAGACATTGCCTGACGACAGGCCGTCGATGACCGATGTGGTTGCTATGTTGGAAGGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCTACGACTGATCTCCTCCAAGCTGCTGCTTCTTCTTCATCAAACTCATACTAA 1953 43.06 MKTSVPLFLFSFFFTILLFDLQLCFGDVASEEFKACGVNYNCGDLVNISYPFWGNERQEFCGRREFGLNCKDNKTTTIQINSMEYNVVNISQLDHRMTIARSDLYDDYCPNNQIEAATLDYSPFTYSSNDLNLSVWYDCPALQGIPRDFTFECGSEGEKRGRANYALEERAMNWSSYMGDCRMKIEVTIMMDVLKEGKMNRTMVVERGVKEGFEVEYGDYHTLACEGCKEYGGACGGNATQEFRCICGNGDAHLYVCTSPPSSGARYANVRWKRKLVVAGTISSAGFILIISIIIFIYSKRIRISNKDKIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLLGFCYEQNKRALVYEYMPKGSLDKYISHNRLQENDMKLDWNTLYNVVIGVARGLEYLHRGCITRILHFDIKPHNILLDDDFCPKISDFGLAKQCRPKETHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNSNDSDGVEQGSEEYFPDWIYNNLTQSEIDGGCCWGSTEEEEEMTRKMMIVGLHCIQTLPDDRPSMTDVVAMLEGSVDGLQIPPKPNLFGPPTTDLLQAAASSSSNSY 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25325427 25330661 + CaPI482276_04g011240.1 Cam04g1124 125202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1124 650 ProSiteProfiles Protein kinase domain profile. 335 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1124 650 Gene3D Phosphorylase Kinase; domain 1 307 410 - -
Cam04g1124 650 SMART serkin_6 335 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1124 650 PANTHER RUST RESISTANCE KINASE LR10-RELATED 265 632 IPR045874 GO:0004672(InterPro)
Cam04g1124 650 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
Cam04g1124 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1124 650 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247(InterPro)
Cam04g1124 650 Gene3D Transferase(Phosphotransferase) domain 1 411 623 - -
Cam04g1124 650 FunFam PR5-like receptor kinase 411 627 - -
Cam04g1124 650 FunFam S-receptor-like serine/threonine-protein kinase 304 410 - -
Cam04g1124 650 Pfam Protein tyrosine and serine/threonine kinase 337 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1124 650 Pfam Wall-associated receptor kinase C-terminal 164 249 IPR032872 -
Cam04g1124 650 SUPERFAMILY Protein kinase-like (PK-like) 323 636 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1120 Cam-Chr4:25305884 Cam04g1124 Cam-Chr4:25325427 1.30E-150 dispersed
Cam04g1122 Cam-Chr4:25314128 Cam04g1124 Cam-Chr4:25325427 0.00E+00 dispersed
Cam04g1124 Cam-Chr4:25325427 Cam05g1915 Cam-Chr5:28079411 1.20E-66 dispersed
Cam04g1123 Cam-Chr4:25320974 Cam04g1124 Cam-Chr4:25325427 1.70E-187 tandem
Cam04g1124 Cam-Chr4:25325427 Cam04g1125 Cam-Chr4:25331519 2.10E-119 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85138 PF07714 PK_Tyr_Ser-Thr 2.90E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1124 - - - 0.0