Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1140 ATGCTTTCGATGGGGCTTTTGTCTTCTCTCTGCGTCTGCTTGCAGAAAAGACTTAAAGCAGCTAATTCTGCGAGTGCCGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAACTAAGTACTTTGCAAATTGCAACTAATTTCTTTTCCGAGGCGAATAAACTCGGCAATGGAGGGTTTGGGCCCGTCTACAAGGGGTTGATGCCAAATGGCCAACAAGTTGCAGTCAAGAAGCTTTCGTTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACCGAAATTTGGTCATTTTGTTGGGCTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTGTATGAGTACTTACCAAACAGAAGTCTTGATTACTTTATTTTCGATAAAAAGAAGTCTCCATCCTTGGACTGGACAACACGGTTTCATATAATTACAGGTATAGCGAGAGGTCTTCTCTACTTACATGAAGAGGCTCCTGCAAGAATTATACATAGAGATGTCAAAGCTAGTAACATATTATTAGATGAGCAATTGAATCCGAAAATCTCAGATTTTGGATTAGCTCGACTTTTTCCTGGGGATGACACACATTTGAATACATTTAAGATTGCCGGCACTCATGGCTATATGGCTCCTGAATATGCAATTCATGGATATTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGGATCCTGGTATTAGAGATTGTTAGTGGAAGAAAAAATTATGACGACCGACTTGGTGCACAACAAGTGGACCTCTTGGGATATGCATGGTTGCTTTACCAAGAAGGAAGGATTTTAGAATTAGCTGATAAAAGCTTAACAAAATGCAATGTAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGTTATGTTGTCAAGCAAGTGTCACGGATAGGCCTGACATGAATACCATTCATCTCATGCTTTCTAGTGATTCGTTCACGTTGCCGCGACCTGGAAGACCTGGAATTCATGGTCGAGCAGCACGTCGAACAACTACCTCTACTTCGAATTTCACCAAAACAAATACTAGTACACAAACTGGCGTTACTAGAGCTTCAACTAGTAGTAGTTTGGTAGAGGATTATTCAAGAAATTCCATTTCTGTTTCTTCTATTGATGAAGGCAGGTGA 1173 40.58 MLSMGLLSSLCVCLQKRLKAANSASADEADDEDVSTDIFFELSTLQIATNFFSEANKLGNGGFGPVYKGLMPNGQQVAVKKLSLDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFIFDKKKSPSLDWTTRFHIITGIARGLLYLHEEAPARIIHRDVKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNYDDRLGAQQVDLLGYAWLLYQEGRILELADKSLTKCNVDEAAMCIQLGLLCCQASVTDRPDMNTIHLMLSSDSFTLPRPGRPGIHGRAARRTTTSTSNFTKTNTSTQTGVTRASTSSSLVEDYSRNSISVSSIDEGR 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25477286 25482183 + CaPI482276_04g011400.1 Cam04g1140 125218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1140 390 FunFam Cysteine-rich receptor-like protein kinase 2 16 127 - -
Cam04g1140 390 MobiDBLite consensus disorder prediction 333 370 - -
Cam04g1140 390 Gene3D Transferase(Phosphotransferase) domain 1 128 328 - -
Cam04g1140 390 SUPERFAMILY Protein kinase-like (PK-like) 40 338 IPR011009 -
Cam04g1140 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1140 390 CDD STKc_IRAK 58 322 - -
Cam04g1140 390 MobiDBLite consensus disorder prediction 342 370 - -
Cam04g1140 390 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 336 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam04g1140 390 SMART serkin_6 52 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1140 390 Pfam Protein tyrosine and serine/threonine kinase 55 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1140 390 Gene3D Phosphorylase Kinase; domain 1 11 127 - -
Cam04g1140 390 FunFam Cysteine-rich receptor-like protein kinase 41 128 328 - -
Cam04g1140 390 ProSiteProfiles Protein kinase domain profile. 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1140 Cam-Chr4:25477286 Cam05g1677 Cam-Chr5:24956488 1.60E-95 dispersed
Cam04g1140 Cam-Chr4:25477286 Cam02g0162 Cam-Chr2:2645804 1.60E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85140 PF07714 PK_Tyr_Ser-Thr 8.10E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1140 - - - 0.0