Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1143 ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCATAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTAGCCAATCAAACTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAAATCACTCCTATTTCACATGTTTTTGAGCCTACAAATCCATTTGGAAATGACGTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAACACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGTTGCTGATGACAAATTGAAGGCAAAGGAAATGAGAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTGGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA 822 39.66 MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFNDSFLANQTPPPPRFLENWGENFSQANQITPISHVFEPTNPFGNDVHGSNKRKLENDAYESSSANSTPQISENGIKTKNNTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSVADDKLKAKEMREGNGGLLVASTQLGPFDLSFGSYSTLPFNTI 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25502305 25503911 + CaPI482276_04g011430.1 Cam04g1143 125221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1143 273 CDD bHLH_AtBPE_like 146 231 - -
Cam04g1143 273 FunFam transcription factor BEE 3-like 153 224 - -
Cam04g1143 273 Gene3D - 153 224 IPR036638 GO:0046983(InterPro)
Cam04g1143 273 SMART finulus 162 212 IPR011598 GO:0046983(InterPro)
Cam04g1143 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 223 IPR036638 GO:0046983(InterPro)
Cam04g1143 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 98 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam04g1143 273 MobiDBLite consensus disorder prediction 101 163 - -
Cam04g1143 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983(InterPro)
Cam04g1143 273 MobiDBLite consensus disorder prediction 130 163 - -
Cam04g1143 273 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983(InterPro)
Cam04g1143 273 MobiDBLite consensus disorder prediction 105 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1143 Cam-Chr4:25502305 Cam08g0929 Cam-Chr8:14366571 1.40E-37 dispersed
Cam04g1143 Cam-Chr4:25502305 Cam06g1615 Cam-Chr6:27616106 1.30E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51789 PF00010 HLH 5.30E-05 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1143 - - - 0.0