Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g1143 | ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCATAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTAGCCAATCAAACTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAAATCACTCCTATTTCACATGTTTTTGAGCCTACAAATCCATTTGGAAATGACGTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAACACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGTTGCTGATGACAAATTGAAGGCAAAGGAAATGAGAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTGGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA | 822 | 39.66 | MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFNDSFLANQTPPPPRFLENWGENFSQANQITPISHVFEPTNPFGNDVHGSNKRKLENDAYESSSANSTPQISENGIKTKNNTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSVADDKLKAKEMREGNGGLLVASTQLGPFDLSFGSYSTLPFNTI | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25502305 | 25503911 | + | CaPI482276_04g011430.1 | Cam04g1143 | 125221 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g1143 | 273 | CDD | bHLH_AtBPE_like | 146 | 231 | - | - | |
Cam04g1143 | 273 | FunFam | transcription factor BEE 3-like | 153 | 224 | - | - | |
Cam04g1143 | 273 | Gene3D | - | 153 | 224 | IPR036638 | GO:0046983(InterPro) | |
Cam04g1143 | 273 | SMART | finulus | 162 | 212 | IPR011598 | GO:0046983(InterPro) | |
Cam04g1143 | 273 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 154 | 223 | IPR036638 | GO:0046983(InterPro) | |
Cam04g1143 | 273 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 98 | 233 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cam04g1143 | 273 | MobiDBLite | consensus disorder prediction | 101 | 163 | - | - | |
Cam04g1143 | 273 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 156 | 206 | IPR011598 | GO:0046983(InterPro) | |
Cam04g1143 | 273 | MobiDBLite | consensus disorder prediction | 130 | 163 | - | - | |
Cam04g1143 | 273 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 207 | IPR011598 | GO:0046983(InterPro) | |
Cam04g1143 | 273 | MobiDBLite | consensus disorder prediction | 105 | 126 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g1143 | Cam-Chr4:25502305 | Cam08g0929 | Cam-Chr8:14366571 | 1.40E-37 | dispersed | |
Cam04g1143 | Cam-Chr4:25502305 | Cam06g1615 | Cam-Chr6:27616106 | 1.30E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51789 | PF00010 | HLH | 5.30E-05 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g1143 | - | - | - | 0.0 |