Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1156 ATGGCTCGGATCTTTGAGTATTTCGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGATGGGAACAAGGGGTTTCATGGATTCAGTTACTTGTATCTACCCTCTCTTCTCGATCAGTATCCTCCTTCCAACAATTCTCGTTGTCCTCCTCCACCACCTCAGCTCCCAACGTGTGTTCTACCAGCTGGGGTCGAGTTTTTTTCATCGGGATTTGATTCCAGTGACCCCTGCACTTTTCCGCGGAGTTATCCGATTGTTTTGACGGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTTGTGAGGACATTGCCGAAGCTTACCGCATTCCACCAAATTCTTATGCTGATAAATGTATCTGTGTTGTTTCGCGTTCGCCCAGCTTCCGTGTCCTTAAAGATGCATTGGAGGAATTGTTTGCTTTGTGCTTCTCCAGCACTGGAAGTAGCAAGCCTCTGTGGGATATCATAGCACACATGGTCTCCAATGTACCACTGTCTACGCCTGGGAAGGATCGGATTTTGTTTAGTATTGAGAATTGCCTTCTTTCCGTTCAGGCTCCATCCAAGGATGGGCTTCCCTATGCTGATATTTCGTTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATGTGATCAAACTTTTCACTGCTGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTTTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGACTCTAACCCAAGCTTTCTATGTTGTCCTGAAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCATATATGATGGGTCTTCATTCTGGCGTTGATACATCTTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACTACTGAGGAAATACCACCTATTCCAGAACCAGAACTTGGATCTTTGCGTTGCGAGCTGATGAAGTTGATATATCCCAATGTTGTTAGCATAGATCAAATGAGGTCTGATTTGCGTAGCTCATCTGATCAGTACCCTAGAGTTAGCAGCAAGCCTTGGGGAGAAGACCATGATCTTCAGCTTAGGTTGATATTTTTAAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAATGCGACTGATGTCTTCAATACACAAGCATTCTTGAAGAAGCGTTCGCGATCAACTAATCAACCAGAAGATCCCATGATAACTCAGTTCCTGGAGTCCCAAGGGTTTTTAGACTATCTAGAGAGATGCATAGGTTCTGATGAAAGTAATAATAATATTCTTGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTCCCATCGTTGTTTGAACCTGAGATCATAACAATCTCTGACCCTGATTTGGGAACATCAGGTTCTGGTGCCAAGTACACTTATGATAGATTTCCTTCAAACATCAGAACTGAGGAGCAGGAAGAAAAGAGAAAACAAATTCTAGCAGCAGCAAGTGGAGCTTTTGAATACTCTGGAAAACATAATCCTAATTCACCTTCTATGCTGATGGGCAAGGATCTGAAAGCAGAAAGCCTCAGTCCAATGGAGAGACAGGCCGAAAGGGATCGCATGGTTTTGGACATAAAAGTCAAGCTACAGGGTCTCTGGCTGCGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCCTTTGAATATGGCACTATTCTTGCTTTGATTGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGTTTTGTTGAGTGTATTAGAGAGCACATAAATACAGGATGGCTTTGTCAGTTAACCGATGAACAATTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATGTACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTCTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGTTATTTTGATTATTTGATGGAACGATCTTCAAATAAATCCGCAAATTATGCATCTCTGGTTTCTGCACAGCTAATTGTTATGGCATCGCACATGGCTGGGCTTGGGCTTCCTGATAGTGATGCTTGGTACATGATTGAGACAATTGCGGAGAAGAACAGCATTGGATACAAGCAACTCATAAAGCTCCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTTCTGTTAAGTTGCAATCCATATCTGCCCATGCATTGCCATCTCCGCGTCCCAAAGATGGATCTGATCAGAATCAGCAACCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGATACATCTGCAAGGATGTTGGGTCGTAGCGGCCGTTGGTCTTCTGATGCCACGAGTGAGAGTGGTACTCCTCAAAGACAGGATTTATCCTCAGCTGGGCAGAAAAAAGTTCAAAGCAATATTCGTGTTCTTAGGGGTCACAGTGGAGCTGTGACAGCACTTCATTGTGTTACAAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGCTTTTTCATTAGTGGAAGCACGGACTGCTCGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAATTGCGAGCAACTTTAAAGGGTCACACAGGACCTGTTCGTGCAATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCAGTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCTCAGGTCAGTTGTGTGCGTATGCTGTCAGGCGAACGTGTCCTTACTGCTGCGCATGATGGAACCGTGAAGATGTGGGATGTCAGAACTGATACTTGTGTGGCAACTGTTGGTCGTTGCTCTAGTGCAGTTCTATGCATGGAATATGATGACTCTACAGGAATATTGGCTGCTGGTGGTAGAGATACAGTAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTTTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACCATAGTTACCGGTAGTGATGATTGGACCGCTAGATTGTGGTCTGTTTCTCGAGGAACATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTTGAGTATTCTACACTGGACAAAGGAATAATAACTGGTTCAACTGATGGACTTCTCCGTTTTTGGGAAAACGAGGATGGGGGTATTAGATGTGTGAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCTCTCTTTCATCGGCCGCAAGAGAGACTCGGTGGCTTCTCTAACACGGGTGCAAAAATGGCTGGATGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGTGCGGCTTCAGACCTTGAAAGGAAACGAATATGCACCGGCGGCCGTAATGGCCTTCTGAGGCTCTGGGAAGCAACCATCAACATCTGA 3660 44.43 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSYLYLPSLLDQYPPSNNSRCPPPPPQLPTCVLPAGVEFFSSGFDSSDPCTFPRSYPIVLTEGDGSKIYVSCIAFRDPVCEDIAEAYRIPPNSYADKCICVVSRSPSFRVLKDALEELFALCFSSTGSSKPLWDIIAHMVSNVPLSTPGKDRILFSIENCLLSVQAPSKDGLPYADISFQPLMQCLDLENVIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQTLTQAFYVVLKHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEEIPPIPEPELGSLRCELMKLIYPNVVSIDQMRSDLRSSSDQYPRVSSKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENNATDVFNTQAFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPSLFEPEIITISDPDLGTSGSGAKYTYDRFPSNIRTEEQEEKRKQILAAASGAFEYSGKHNPNSPSMLMGKDLKAESLSPMERQAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEMYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMERSSNKSANYASLVSAQLIVMASHMAGLGLPDSDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSSVKLQSISAHALPSPRPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARMLGRSGRWSSDATSESGTPQRQDLSSAGQKKVQSNIRVLRGHSGAVTALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDQSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDTVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGTCDAVLACHAGPILAVEYSTLDKGIITGSTDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCAASDLERKRICTGGRNGLLRLWEATINI 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25609239 25622045 + CaPI482276_04g011560.1 Cam04g1156 125234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 890 908 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 950 - -
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 1083 1115 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 1076 1115 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 857 908 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 953 991 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 1036 1073 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 913 950 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 994 1033 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 1175 1214 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 SMART WD40_4 1120 1157 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 Gene3D - 202 398 IPR043153 -
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 960 1000 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 ProSiteProfiles Tripartite DENN domain profile. 19 453 IPR037516 -
Cam04g1156 1219 MobiDBLite consensus disorder prediction 787 809 - -
Cam04g1156 1219 CDD WD40 860 1156 - -
Cam04g1156 1219 ProSitePatterns Trp-Asp (WD) repeats signature. 1020 1034 IPR019775 -
Cam04g1156 1219 Gene3D - 1005 1218 IPR015943 GO:0005515(InterPro)
Cam04g1156 1219 SMART uDENN_cls 1 104 IPR005113 -
Cam04g1156 1219 MobiDBLite consensus disorder prediction 825 856 - -
Cam04g1156 1219 Gene3D - 1 172 - -
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 1005 1042 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 Pfam DENN (AEX-3) domain 123 315 IPR001194 -
Cam04g1156 1219 FunFam DENN domain and WD repeat-containing protein SCD1 202 398 - -
Cam04g1156 1219 MobiDBLite consensus disorder prediction 794 809 - -
Cam04g1156 1219 SUPERFAMILY WD40 repeat-like 861 1117 IPR036322 GO:0005515(InterPro)
Cam04g1156 1219 SMART dDENN_cls 377 445 IPR005112 -
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 960 994 - -
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1083 1115 - -
Cam04g1156 1219 Pfam uDENN domain 35 103 IPR005113 -
Cam04g1156 1219 ProSitePatterns Trp-Asp (WD) repeats signature. 978 992 IPR019775 -
Cam04g1156 1219 FunFam DENN domain and WD repeat-containing protein SCD1 815 1041 - -
Cam04g1156 1219 Gene3D - 848 1004 IPR015943 GO:0005515(InterPro)
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 1043 1082 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 FunFam DENN domain and WD repeat-containing protein SCD1 1042 1219 - -
Cam04g1156 1219 Pfam WD domain, G-beta repeat 956 991 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 Pfam WD domain, G-beta repeat 1077 1114 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 Pfam WD domain, G-beta repeat 996 1033 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 Pfam WD domain, G-beta repeat 916 950 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 Pfam WD domain, G-beta repeat 1038 1073 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 Pfam WD domain, G-beta repeat 860 908 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 959 IPR001680 GO:0005515(InterPro)
Cam04g1156 1219 FunFam DENN domain and WD repeat-containing protein SCD1 1 175 - -
Cam04g1156 1219 PRINTS G protein beta WD-40 repeat signature 937 951 IPR020472 -
Cam04g1156 1219 PRINTS G protein beta WD-40 repeat signature 978 992 IPR020472 -
Cam04g1156 1219 PRINTS G protein beta WD-40 repeat signature 1060 1074 IPR020472 -
Cam04g1156 1219 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 27 1212 IPR051696 GO:0031410(PANTHER)|GO:0032483(PANTHER)
Cam04g1156 1219 SMART DENN_cls 122 317 IPR001194 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1156 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30