Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1162 ATGTGCAATGGGGATCCAGCAATGGCGGCATTTGAAGCGCGGGGAAAGAGATTGGGCCAAGAAAATGGGCCTGGAGAGTTGTGTCTTTGGAGATTGATGGGTGTTGCCTACTGCTATGTGCTTGCTATGGCCAAGCCTCGCAAGCCCAAGAACACCGACGACGCGAAGCCACCTGACAACTCCGGAGCTGTAGTTCGTCACCAGAAGCTTTGCCTTTCCATCGACATTGACAAACGTCGCGTTTATGGGTTCACCGAGTTGGAAATTGCGGTTCCTGATATTGGCATAGTTGGGTTGCACGCGGAGAATCTTGGGATTGTGAGTGTTTCAGTGGATGGTGACCCTACTGAATTCGAGTATTATCCGCGGCCTCAACATGTGGAAAGTGAGAAGAGTTTTAAAGCAGTGTCGTCGCCGAGCTCTGCTGCAGATGCTGCGGGGTCAATTTATTTGTCTTCAATCGAGAAAGAATTGGTTCCTAATTTGTTGATAAACTGCTGCAAGGCTTTCAAGAGCGGAAGTGAGCAGCAAGACCAGCCATTTCTGGAGAATGGAGTGCAACCTGCGGAGGAGGACAAGCAGAATATAAGGCTGGTTCGTATTGATTACTGGGTAGAGAAATCAGAGGTAGGTATTCACTTCTATAACCACATGGCTCACACTGACAACCAAATAAGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGATGGCCTACAACGATGCAAGTATGACCTCGAGTTTACTGTCTCTCAAAATCTTGTGGCTGTCAGTAATGGAATTCTGTTGTACCAGGTCTTGAGCAAGGACAATCCTCCCTGCAAAACTTATGTTTATCGAGTAGACATCCCCGTCAATGCACATTGGATATCACTTGCTGTTGGACCGTTTGAAATCCTTGCTGATCATCAAAATGGACTTATATCACACATGTGCTCGCCCGTTAACTCTTTAAAGCTTAAGCATACGGTGGAATTTTTTCATAGTGCATTCAGCTGCTATAAGGATTACCTTTCGGTGGACTTCCCATTTGGGTCATACAAACAAATCTTCATAGAGCCGGAGATTGCGGTATCATCAGCATGTTTGGGAGTTTCCATGTGTATATTTAGTTCTCATCTTTTGTTTGATGAGAAAATCATCGATCAGACCATAGATACTAGGATTAAACTTGCTTATGCTCTGGCAAGACAGTGGTTTGGCATTTATATTACGCCTGAAGCCGCAAATGACGAGTGGTTGTTGGATGGTCTTGCTGGTTTCTTGACTGATTTATTTATCAAGAAGAACTTGGGAAATAATGAGGCACGCTACCAGAGATACAAGGCCAATTGTGCTGTTTGTAGAGCAGATGATAGTGGTTTGACCACCTTGAGTTCCTCTTCTGCTTGCAAAGATTTGTATGGGACCCAACATATTGGTATATACGGAAAAATAAGATCATGGAAGTCTGTGGCAATCCTTCAAATGTTGGAAAAGCAGATGGGGCCTGAGTCTTTCCGCAAGATTCTACAAAATATTGTTTCTCGTGCTAAAGATACTACCTCTACGTCACACTCACTTAGCACGAAAGAGTTTCGTCAATTGGCCAATAAGATTGGAAACCTTGAGCGGCCATTTCTCAAAGAGTTCTTTCCTCGGTGGGTCGAATCATGTGGTTGTCCCCTGCTGAGGATGGGGTTTTCGTACAACAAGCGGAAAAATATGGTTGAGATGGCGGTGTCACGGGAATGCACAGTTACACCAGCCACAAGTGTAGAAAATCGGGACAGTGATGCTGGATGGCCTGGTATGATGAGTATTAGGATTTATGAGCTTGATGGTGTGTTTGATCATCCAGTTCTTCCAATGACTGGAGAGTCCTGGCAGCTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGGCGCCTCCAGAAAACTAAAAAGGGATCGAAACCTGATGGTTCTGATGACAATGCTGATATACCTGCACTCGACGTTCGCTCTAGTGTGGAATCTCCTTTGTTATGGTTGAGAGCAGACCCTGAGATGGAATACCTTGCTGAAATTCATTTTCATCAACCTGTTCAGATGTGGATCAATCAATTGGAGAAGGACAAGGATGTCATTGCTCAAGCACAAGCAATCACGACATTAGAGATGTTGCCTCAACCATCTTTTTCTGTTGTTAATGCTCTTAACAATTTCCTCAGAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCATTGGCAATGGCCAAAACAGCCTCAGAGGATACTGATTGGGCTGGTTTGCTTAATTTGATTAAATTTTTTAAAAGTCAGAGGTTTGATGCAGATACCGGACTCCCCAAGCCAAATGAATTTCGTGATTTTCCTGAGTATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGGGCCACCGACCAAAAAAGCCCTAGAGAAGCTGTTGAGTTTGTTTTGCAACTTTTGAAGTACAACGACAACAATGGGAATCCTTACTCAGATGTTTTCTGGTTGGCTGCACTAGTCCAGTCAGTTGGTGAGCTTGAATTTGGGCAACAGAGCATTCTGTTTTTAGCATCGCTTCTTAAAAGGATTGATAGACTTCTGCAGTTTGACAGGCTGATGCCAAGCTATAACGGGATCTTGACTATTAGCTGCATCAGAACCTTGACCCAGATTGCACTGAAACTATCTGGACTTCTCTCTCTTGATCGTATCTTTGAACTGATAAGACCTTTTCGAGATTTTAAGTCCATGTGGCAAGTTCGAATTGAGGCAACTCGAGCACTTCTCGATCTTGAGTACCACTGCAATGGAATTGATGCAGCATTGTTATTGTTTATTAAATATCTAGAAGAAGAGACTTCCTTGCGAGGCCAAGTGAAGCTGGGGGTCCATGTTATGCGTTTATGTCAGATAATGAGAAGATCTGATTCAAATGATGTAGTCAATAATGACACTTTTGTTGCTTTGCTCCTCCTACTTGAAGGCCACATGGCGTTTAACAATGTCCATCTTCGTCACTACTTGTTCTGTATTTTACAAGTCCTTGCAGGACGGCCCCCAACACTTTATGGAGTTCCTAGAGAATATAAAACATTGCATATGGGCGACGTGGGAACTTGCAGTGAACAGAAGAGGATGTTAACTTCTCTCATACCTGAATTCAATCCACCAGAGCCATCATCAGTCTCTGCAGCGGCGCCTATGCCGTGTATCCCAGCAACTCTGTCATCAGAACCACTTCATACTTCCAAACTGAGGCCTGACAGCTTAGCAATTCCCGAGCTTTCCAAGGAAGGAGGAACAATTGCAGAGGTTCCTAAGCAAGATATGGCAATAGCAGAAGCTCCCAGAGAGGCAGCTTCTGTTTCCAATAGCCATGAGAGGAAGTTGCCAGTTGTTAAGATTAAAGTCAGATCATCTGCTGCTACAAGTAGAGCAGATGCGGATAATCTAACCACTGAAAGATCTCATGCTGCACCTCGTGAAACGGATGTTGGTCCTACTAGTTCTGTTTCTGTTGATGCACCCCAAAGAAATATTGCTGAGGCTACGAGTATCAGCAACCATATTCTGGAGGAGGTTAACTCCTGTCATGATCGCGGGTCTCACATGACAGCCAGCATTGGCAGTGCAAAACTTGCGAGTTATGGTGATGAACTTGAGAAGGAGTTCCAGTGCACTGCTGATTCCAGTAGGGCTTTTGGACATTTTCAGCTAGAAGATCCTTCGTCATCGAGCATCATACAAGATAACAATATTGATGCTGATGCACAGAAGTATGCAAGTCTTCAGACACTTTCTTTACCACAGCATGATCATGGGTTAGCCTCTTCGCACTCTCGCCATGGGAAAAAGGAAAAGAAGAAAGATAAAGAAAAGAAACGTAAACGAGAAAGTCACAAAGAACATCGCAACGATCCTGAATACATCGAGCGCAAACGATTGAAGAAAGAGAAGAAACAAAAAGAAAAAGAGATGGCAAAGCTATTGAATGAAGAGGTGAAGCCACTGCCTCTAGCAATGCCTCGTATAAAAGAACCACCAACCAAGTCAACACCTGTGCAGCTGGAAACAAAAGAACCTAGTGGATCGAGATTAATTGTAGGAGTTCATAGTAAGCCCGAGGCATCAGAAGGTACTACTTCTGCTGCCCCCAAACTTAGAATTAAATTCAAAAATCGGACACTGAACAATTCATAA 4209 44.1 MCNGDPAMAAFEARGKRLGQENGPGELCLWRLMGVAYCYVLAMAKPRKPKNTDDAKPPDNSGAVVRHQKLCLSIDIDKRRVYGFTELEIAVPDIGIVGLHAENLGIVSVSVDGDPTEFEYYPRPQHVESEKSFKAVSSPSSAADAAGSIYLSSIEKELVPNLLINCCKAFKSGSEQQDQPFLENGVQPAEEDKQNIRLVRIDYWVEKSEVGIHFYNHMAHTDNQIRRARCWFPCMDDGLQRCKYDLEFTVSQNLVAVSNGILLYQVLSKDNPPCKTYVYRVDIPVNAHWISLAVGPFEILADHQNGLISHMCSPVNSLKLKHTVEFFHSAFSCYKDYLSVDFPFGSYKQIFIEPEIAVSSACLGVSMCIFSSHLLFDEKIIDQTIDTRIKLAYALARQWFGIYITPEAANDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCAVCRADDSGLTTLSSSSACKDLYGTQHIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQNIVSRAKDTTSTSHSLSTKEFRQLANKIGNLERPFLKEFFPRWVESCGCPLLRMGFSYNKRKNMVEMAVSRECTVTPATSVENRDSDAGWPGMMSIRIYELDGVFDHPVLPMTGESWQLLEIQCHSKLAARRLQKTKKGSKPDGSDDNADIPALDVRSSVESPLLWLRADPEMEYLAEIHFHQPVQMWINQLEKDKDVIAQAQAITTLEMLPQPSFSVVNALNNFLRDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKSQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRATDQKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGLLSLDRIFELIRPFRDFKSMWQVRIEATRALLDLEYHCNGIDAALLLFIKYLEEETSLRGQVKLGVHVMRLCQIMRRSDSNDVVNNDTFVALLLLLEGHMAFNNVHLRHYLFCILQVLAGRPPTLYGVPREYKTLHMGDVGTCSEQKRMLTSLIPEFNPPEPSSVSAAAPMPCIPATLSSEPLHTSKLRPDSLAIPELSKEGGTIAEVPKQDMAIAEAPREAASVSNSHERKLPVVKIKVRSSAATSRADADNLTTERSHAAPRETDVGPTSSVSVDAPQRNIAEATSISNHILEEVNSCHDRGSHMTASIGSAKLASYGDELEKEFQCTADSSRAFGHFQLEDPSSSSIIQDNNIDADAQKYASLQTLSLPQHDHGLASSHSRHGKKEKKKDKEKKRKRESHKEHRNDPEYIERKRLKKEKKQKEKEMAKLLNEEVKPLPLAMPRIKEPPTKSTPVQLETKEPSGSRLIVGVHSKPEASEGTTSAAPKLRIKFKNRTLNNS 1402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25694957 25717612 - CaPI482276_04g011620.1 Cam04g1162 125240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1162 1402 Coils Coil 1313 1338 - -
Cam04g1162 1402 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 43 1339 IPR037813 GO:0000976(PANTHER)|GO:0003682(PANTHER)|GO:0005669(PANTHER)|GO:0005669(InterPro)|GO:0006367(PANTHER)|GO:0016251(PANTHER)
Cam04g1162 1402 MobiDBLite consensus disorder prediction 1281 1301 - -
Cam04g1162 1402 Gene3D Neutral Protease Domain 2 301 553 IPR027268 -
Cam04g1162 1402 CDD M1_like_TAF2 67 549 - -
Cam04g1162 1402 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 312 558 - -
Cam04g1162 1402 MobiDBLite consensus disorder prediction 1274 1390 - -
Cam04g1162 1402 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 54 296 IPR042097 -
Cam04g1162 1402 MobiDBLite consensus disorder prediction 1302 1334 - -
Cam04g1162 1402 MobiDBLite consensus disorder prediction 638 658 - -
Cam04g1162 1402 Gene3D - 683 962 IPR011989 -
Cam04g1162 1402 MobiDBLite consensus disorder prediction 1139 1180 - -
Cam04g1162 1402 Pfam Peptidase family M1 domain 326 523 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Cam04g1162 1402 FunFam Transcription initiation factor TFIID subunit 302 553 - -
Cam04g1162 1402 SUPERFAMILY ARM repeat 488 1020 IPR016024 -
Cam04g1162 1402 MobiDBLite consensus disorder prediction 641 655 - -
Cam04g1162 1402 Gene3D tricorn interacting facor f3 domain 63 295 IPR042097 -
Cam04g1162 1402 MobiDBLite consensus disorder prediction 1166 1180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1162 K03128 - - csv:101210662 2496.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32