Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1175 ATGGCGACGAAGATGGCCATCAGAGCTTCCGCCATTCCCAGACATCACCCACCTCCTTCACTTCCTTCTTCCTCTCACAGATCCGATTCCAAATCCCAATTCCGTCCCATCTCCGTTTCTCTACCAGCTTCCACTACCCTCTCTCTCTTAGCCCTATTTTCTTCTCCTTACGAAGCTAGGGCTCTCAACAAAGACCAAATCGTCTCATCTCTCAATGAAGTGGAGAAGACGTTCGATCAGGTTCAAGAAATGGGTTCGAATTTCTTTGATATTGCACAACAGGCCATTGAGTCTGCTAGAAGTATTTTGAAGCCGGGCGTTGATGCGGCGCTGCCGATTGTAAAGCAGGCCGGAGAAGAGGCGCTGAAAGTTGCTTCTCCAACAATTTCTGAGGCTTCAAAGAAAGCCCTAGAAGCCCTTGAAGGCTCTGGCATTGACACTGAACCTGTTCTAAGTGCTGCTAAGACAGTAGTAGGTGCAGCACAACAAACTGGTAAGGTCATTGAAGTTGCCAAACCGATAGCCTCATCGACTGTCGAGACGATCTCCACGGCCGACCCTCTCCTGATTGCAGAAATTGCTGGAGTCTTAGCCTTGGCATACCTGCTCTTTCCTCCAATTTGGTCTGCCATCTCTTTCAACTTTCGTGGCTACAAAGGTGAACTCTCTCCTGCTCAAACGCTCGATCTAATTTCGTCGAGCAATTACTTTCTGATCGATATACGATCCGAGAAGGACAAGGATAAGTCTGGCATTCCTCGCCTTCCTTCGAGTGCTAAGAACCAGTCGATTGCCATTCCTTTGGAAGAGTTACCTAGCAAGTTGCGGGGCATCGTCCGAAATGTAAAGAAACTAGAAGCTGAACTTTCAGCCATCAAGATTTCATATCTCAAGAAACTTAACAAAGGCTCCAATATAGTGATCTTGGGCTCGTACTCAGACTCAGCAAAAGCGGTTGCCAAAGCACTAACAAGACTTGGCTTCAAGAACTCCTGGATTGTAACTGATGGGTTTTTAGGTAGCAAAGGTTGGTTACAGAGTCGGTTAGGAACAGATACATATAAGTTCTCATTCGCAGAGATCCTTTCACCATCCCGAGTCATCCCATCTGGAGCCAAACGTTTCGGGACGACCTCACTTTCATCAGCATCTGGTCAAAAATTGCTTCCCGGTGCTGATTAA 1182 47.12 MATKMAIRASAIPRHHPPPSLPSSSHRSDSKSQFRPISVSLPASTTLSLLALFSSPYEARALNKDQIVSSLNEVEKTFDQVQEMGSNFFDIAQQAIESARSILKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALEGSGIDTEPVLSAAKTVVGAAQQTGKVIEVAKPIASSTVETISTADPLLIAEIAGVLALAYLLFPPIWSAISFNFRGYKGELSPAQTLDLISSSNYFLIDIRSEKDKDKSGIPRLPSSAKNQSIAIPLEELPSKLRGIVRNVKKLEAELSAIKISYLKKLNKGSNIVILGSYSDSAKAVAKALTRLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVIPSGAKRFGTTSLSSASGQKLLPGAD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25833496 25836015 + CaPI482276_04g011750.1 Cam04g1175 125253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1175 393 MobiDBLite consensus disorder prediction 1 34 - -
Cam04g1175 393 Gene3D - 219 358 IPR036873 -
Cam04g1175 393 CDD RHOD 226 340 - -
Cam04g1175 393 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 199 344 IPR036873 -
Cam04g1175 393 ProSiteProfiles Rhodanese domain profile. 232 353 IPR001763 -
Cam04g1175 393 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 46 351 IPR044690 GO:0009704(InterPro)|GO:0071277(InterPro)|GO:0090333(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1175 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g1149 . 1185 1500 Sulfurtransferasese/Rhodanese AT1G79230 75.6 1.1e-145 513.1
Cam05g1149 . 1185 1449 Sulfurtransferasese/Rhodanese AT1G16460 73.2 5.9e-113 404.1
Cam04g1175 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 60.1 1.1e-81 300.4
Cam05g0114 . 480 940 Sulfurtransferasese/Rhodanese AT4G01050 52.7 2.9e-121 432.6
Cam01g1142 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.7 2.1e-224 775.4
Cam07g0536 . 84 436 Sulfurtransferasese/Rhodanese AT2G40760 75.6 1.5e-156 549.7
Cam10g1159 . 553 881 Sulfurtransferasese/Rhodanese AT1G17850 68.3 1.8e-138 489.6
Cam04g0102 . 30 235 Sulfurtransferasese/Rhodanese AT2G42220 73.8 9.2e-86 313.5
Cam10g2170 . 376 556 Sulfurtransferasese/Rhodanese AT3G08920 63.0 1.8e-64 242.7
Cam06g1894 . 1 292 Sulfurtransferasese/Rhodanese AT4G24750 66.8 3.5e-111 398.3
Cam02g2357 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 66.1 2.6e-85 312.4
Cam10g0476 . 113 464 Sulfurtransferasese/Rhodanese AT5G55130 73.0 3.6e-150 528.1
Cam05g1078 . 234 414 Sulfurtransferasese/Rhodanese AT4G27700 78.5 3.3e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32