Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1192 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAATAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGAGTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGATCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCTAAGAAGATAAAGGAAAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGCAGAATAGCCCTGCCATGGAATCTTCTCCGCTTCTTTTACCTCAGCCATTCCAATCCCTTAACATGAGTTGTCCATACCCAACACACGGCACCGGAGACGATGACTCTGCCGCGAATCATGACAGATCCAGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTTGGTGATTAA 741 41.16 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWSLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISDLQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQQNSPAMESSPLLLPQPFQSLNMSCPYPTHGTGDDDSAANHDRSSALLPPWMLRHHLGD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25990888 25997027 - CaPI482276_04g011920.1 Cam04g1192 125270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1192 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam04g1192 246 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam04g1192 246 MobiDBLite consensus disorder prediction 181 214 - -
Cam04g1192 246 Coils Coil 122 145 - -
Cam04g1192 246 Coils Coil 151 188 - -
Cam04g1192 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cam04g1192 246 MobiDBLite consensus disorder prediction 176 230 - -
Cam04g1192 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam04g1192 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1192 246 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam04g1192 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1192 Cam-Chr4:25990888 Cam08g1504 Cam-Chr8:21264245 8.20E-69 dispersed
Cam04g1192 Cam-Chr4:25990888 Cam04g1193 Cam-Chr4:26004192 1.50E-41 tandem
Cam01g2628 Cam-Chr1:37822259 Cam04g1192 Cam-Chr4:25990888 2.90E-30 transposed
Cam04g1192 Cam-Chr4:25990888 Cam07g1621 Cam-Chr7:30810847 1.60E-43 wgd
Cam04g1192 Cam-Chr4:25990888 Cam08g1503 Cam-Chr8:21251092 3.00E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51796 PF01486 K-box 1.30E-30 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1192 K09264 - csv:101207225 413.69