Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1193 ATGGGAAGAGGAAGAGTAGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGGAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTTTGAGTTTTGTAGTGGTTCTAGCATGGCCAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATACTGGATGCTACTCGTCAAGTAAATGAGAACCATCCACAGAGCTTTGATGATTATTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAAAGAAACCTTTTGGGAGAAGATTTAGGTCCATTGAATACCAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGATCAGCTTGCAGAACTTCAACACAAGGAACACATGCTTGTGGAAGACAATCGAGGTTTAAGGAAAAAGCTTGAAGAAAGCAGTGCACAACTCACAGCGGCGGCCGCCACATGGGGCTGGGAAGGGGCCGCCGGAGGCCACAGCATGGAGTATCCCAGCCGTGTTGCTTCACAATCAGACGCCTTCTTCCACCCCATAATTCAACCCACTCCGACTTTACAAATTGGGTACAATTCTGTTGGGTCAATGGGGTTGAATAATGTTGAACCTCCATCCCAAAATGCCAATAATCCGTATCACCTTGGCTGGATGCTTTAA 762 44.09 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMAKTLEKYRRCSYGILDATRQVNENHPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKEHMLVEDNRGLRKKLEESSAQLTAAAATWGWEGAAGGHSMEYPSRVASQSDAFFHPIIQPTPTLQIGYNSVGSMGLNNVEPPSQNANNPYHLGWML 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26004192 26008106 - CaPI482276_04g011930.1 Cam04g1193 125271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1193 253 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam04g1193 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 Pfam K-box region 88 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam04g1193 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam04g1193 253 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 FunFam MADS-box transcription factor 1 13 86 - -
Cam04g1193 253 Coils Coil 125 145 - -
Cam04g1193 253 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g1193 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1193 Cam-Chr4:26004192 Cam07g1621 Cam-Chr7:30810847 6.20E-72 dispersed
Cam04g1192 Cam-Chr4:25990888 Cam04g1193 Cam-Chr4:26004192 1.50E-41 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51797 PF01486 K-box 3.80E-25 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1193 K09264 - csv:101204197 424.861