Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1194 ATGGAGTCGTGGAACTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAAAACCCATGTAGTTTTGGGGACAACATGCTTCTCTCAAGTGGTGGTCAGCATGTGGAGGATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGTTGATTCTGTCAGTGATGTCTTGAATACTAAAATTGATGGAGGTAGAAACTTGAATCTGGTCTTGCCCACCTTTCATGGAGAAGAGGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCTAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATGTCCAGACCGCGTTTTGCCAAGTCTACGGTTGTAGCAAAGATCTCAGCTCCTCCAAAGATTATCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGCAAACGGCTTGCAGGCCATAATGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCATATAATGGTATTGGAGACGGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTGGGAGAAAATGATTGGTGTAAGCGTATAAAAGTTGAGGGCAAAAATGATTATAATTCTATGTCTGCAACTTCACTGGGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTTCTTTTCAAGAAAATGGAACTAGTACAGCACCTACAATAAACATGTTAAGCGAGACAACTTGCCAATATTCACATAATGTGGGAGGTTCCCATATTGATACACATCCTTTGTTCCACCATACTACCTTACCAAGCGAAGACTTTGGGGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACGAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATTATGTCTGAGAGTCAATCGAATTACAGCATGAGTGAACTCTCCGAAAAGTTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTTCGAGTAAATTTGCCTCAGGGATGAGTGAAGCTCAAATGGGTCCCATACCGACGTGTGAAAGTAGTAATCGTACTGTCTCCTTTCAGATTCCCGATAGGGTTCTTCATAGATCAGGTTTGGCAAATCCCAAAGCTAATCTCTCCTATGAAGGCACTCCAACTATTGACTTGCTACAACTCTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCGTGCAGGACTCTGCATAG 1638 42.67 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLSSGGQHVEDQSFGELEFPQMVGKQLPVDSVSDVLNTKIDGGRNLNLVLPTFHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNVQTAFCQVYGCSKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDGRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKNDYNSMSATSLGNRHLNVKSPLLPYDFEVQIPSFQENGTSTAPTINMLSETTCQYSHNVGGSHIDTHPLFHHTTLPSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSRSASNHPSIVHIPRAFIMSESQSNYSMSELSEKFMGVSPQASSTGISSKFASGMSEAQMGPIPTCESSNRTVSFQIPDRVLHRSGLANPKANLSYEGTPTIDLLQLSSQLQRVEHQRHSVQDSA 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26022179 26027161 + CaPI482276_04g011940.1 Cam04g1194 125272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1194 545 Pfam SBP domain 174 247 IPR004333 GO:0003677(InterPro)
Cam04g1194 545 MobiDBLite consensus disorder prediction 144 163 - -
Cam04g1194 545 MobiDBLite consensus disorder prediction 1 22 - -
Cam04g1194 545 Gene3D - 165 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam04g1194 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 119 483 IPR044817 GO:0003677(InterPro)
Cam04g1194 545 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam04g1194 545 MobiDBLite consensus disorder prediction 143 163 - -
Cam04g1194 545 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Cam04g1194 545 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1194 Cam-Chr4:26022179 Cam06g0016 Cam-Chr6:2001007 9.40E-33 dispersed
Cam10g1498 Cam-Chr10:28743992 Cam04g1194 Cam-Chr4:26022179 5.30E-29 transposed
Cam04g1194 Cam-Chr4:26022179 Cam06g1685 Cam-Chr6:28240277 3.60E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51798 PF03110 SBP 4.50E-31 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1194 - - - 0.0