Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1196 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAAACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCTGACTTGGAATGTGACATGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTCGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTTGAAGAATGCGAGAGTGGAGTCGGCGTGGAGCAGGGATTTAGCAGTAAGGGTGCTGAACTGAAAGAACTATTTTGCATATCGATTTTGGCCTCTGTTTCGATTTGCTTAGTAGAAGTTTTGTGCTTTTTGTTCTCCTTAGAAGTCCTCATGGTTTCTGAAATTGAAGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACACAGCCCTCTCGTGCTACTGCCATCGACTTCAGCTCTCCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCAAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 2667 43.34 MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWVWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVKLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGLTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACRCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTFEECESGVGVEQGFSSKGAELKELFCISILASVSICLVEVLCFLFSLEVLMVSEIEAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTQPSRATAIDFSSPHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26038357 26046396 + CaPI482276_04g011960.1 Cam04g1196 125274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 806 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam COBRA-like protein 49 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cam04g1196 888 MobiDBLite consensus disorder prediction 540 575 - -
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 665 - -
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 721 762 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 MobiDBLite consensus disorder prediction 540 562 - -
Cam04g1196 888 CDD WD40 571 885 - -
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 672 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 721 753 - -
Cam04g1196 888 ProSitePatterns Trp-Asp (WD) repeats signature. 784 798 IPR019775 -
Cam04g1196 888 Pfam WD domain, G-beta repeat 628 663 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam WD domain, G-beta repeat 758 797 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam WD domain, G-beta repeat 723 753 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam WD domain, G-beta repeat 572 606 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 616 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 FunFam Cleavage stimulation factor subunit 50 558 888 - -
Cam04g1196 888 Gene3D - 558 887 IPR015943 GO:0005515(InterPro)
Cam04g1196 888 SUPERFAMILY WD40 repeat-like 567 885 IPR036322 GO:0005515(InterPro)
Cam04g1196 888 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 483 887 IPR044633 GO:0003723(PANTHER)|GO:0005848(PANTHER)|GO:0005848(InterPro)|GO:0031124(InterPro)
Cam04g1196 888 SMART WD40_4 845 885 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 756 797 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 568 607 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 710 753 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 669 707 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 624 663 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1196 Cam-Chr4:26038357 Cam07g1617 Cam-Chr7:30777300 2.20E-164 dispersed
Cam04g1196 Cam-Chr4:26038357 Cam06g1687 Cam-Chr6:28258485 1.80E-158 wgd
Cam04g1196 Cam-Chr4:26038357 Cam07g1616 Cam-Chr7:30773865 3.80E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1196 K14406 - csv:101203708 802.357