Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1196 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAAACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCTGACTTGGAATGTGACATGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTCGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTTGAAGAATGCGAGAGTGGAGTCGGCGTGGAGCAGGGATTTAGCAGTAAGGGTGCTGAACTGAAAGAACTATTTTGCATATCGATTTTGGCCTCTGTTTCGATTTGCTTAGTAGAAGTTTTGTGCTTTTTGTTCTCCTTAGAAGTCCTCATGGTTTCTGAAATTGAAGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACACAGCCCTCTCGTGCTACTGCCATCGACTTCAGCTCTCCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCAAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 2667 43.34 MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWVWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVKLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGLTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACRCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTFEECESGVGVEQGFSSKGAELKELFCISILASVSICLVEVLCFLFSLEVLMVSEIEAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTQPSRATAIDFSSPHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26038357 26046396 + CaPI482276_04g011960.1 Cam04g1196 125274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 806 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam COBRA-like protein 49 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cam04g1196 888 MobiDBLite consensus disorder prediction 540 575 - -
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 665 - -
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 721 762 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 MobiDBLite consensus disorder prediction 540 562 - -
Cam04g1196 888 CDD WD40 571 885 - -
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 672 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 721 753 - -
Cam04g1196 888 ProSitePatterns Trp-Asp (WD) repeats signature. 784 798 IPR019775 -
Cam04g1196 888 Pfam WD domain, G-beta repeat 628 663 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam WD domain, G-beta repeat 758 797 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam WD domain, G-beta repeat 723 753 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 Pfam WD domain, G-beta repeat 572 606 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 616 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 FunFam Cleavage stimulation factor subunit 50 558 888 - -
Cam04g1196 888 Gene3D - 558 887 IPR015943 GO:0005515(InterPro)
Cam04g1196 888 SUPERFAMILY WD40 repeat-like 567 885 IPR036322 GO:0005515(InterPro)
Cam04g1196 888 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 483 887 IPR044633 GO:0003723(PANTHER)|GO:0005848(PANTHER)|GO:0005848(InterPro)|GO:0031124(InterPro)
Cam04g1196 888 SMART WD40_4 845 885 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 756 797 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 568 607 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 710 753 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 669 707 IPR001680 GO:0005515(InterPro)
Cam04g1196 888 SMART WD40_4 624 663 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1196 K14406 - - csv:101203708 802.357
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1196 Cam-Chr4:26038357 Cam07g1617 Cam-Chr7:30777300 2.20E-164 dispersed
Cam04g1196 Cam-Chr4:26038357 Cam06g1687 Cam-Chr6:28258485 1.80E-158 wgd
Cam04g1196 Cam-Chr4:26038357 Cam07g1616 Cam-Chr7:30773865 3.80E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1688 . 48 447 COBRA Gene Family AT5G60920 80.3 1.8e-209 725.3
Cam07g1616 . 44 450 COBRA Gene Family AT5G60920 75.2 7.4e-200 693.3
Cam07g1617 . 31 426 COBRA Gene Family AT5G60920 68.5 3.8e-180 627.9
Cam06g1687 . 55 452 COBRA Gene Family AT5G60920 69.1 6.5e-180 627.1
Cam04g1196 . 37 429 COBRA Gene Family AT5G60920 58.7 3.6e-146 515.0
Cam05g1111 . 31 425 COBRA Gene Family AT5G60920 54.2 7.3e-131 464.2
Cam06g1688 . 22 451 COBRA Gene Family AT3G02210 74.2 5.0e-205 710.7
Cam07g1616 . 19 448 COBRA Gene Family AT3G02210 74.2 3.6e-203 704.5
Cam07g1617 . 2 429 COBRA Gene Family AT3G02210 66.6 1.1e-180 629.8
Cam06g1687 . 27 452 COBRA Gene Family AT3G02210 66.4 6.1e-179 624.0
Cam04g1196 . 11 423 COBRA Gene Family AT3G02210 57.1 5.6e-148 521.2
Cam05g1111 . 1 420 COBRA Gene Family AT3G02210 55.2 5.6e-140 494.6
Cam06g1688 . 21 446 COBRA Gene Family AT3G29810 75.0 3.8e-202 701.0
Cam07g1616 . 29 448 COBRA Gene Family AT3G29810 72.1 3.9e-194 674.5
Cam07g1617 . 14 428 COBRA Gene Family AT3G29810 66.0 8.1e-176 613.6
Cam06g1687 . 38 436 COBRA Gene Family AT3G29810 66.9 1.5e-174 609.4
Cam04g1196 . 25 428 COBRA Gene Family AT3G29810 57.3 2.5e-145 512.3
Cam05g1111 . 13 430 COBRA Gene Family AT3G29810 55.6 8.4e-141 497.3
Cam06g1687 . 32 363 COBRA Gene Family AT5G15630 83.4 3.0e-178 621.3
Cam07g1617 . 9 339 COBRA Gene Family AT5G15630 82.5 2.1e-176 615.1
Cam06g1688 . 31 361 COBRA Gene Family AT5G15630 73.2 1.5e-150 529.3
Cam07g1616 . 29 358 COBRA Gene Family AT5G15630 68.2 2.2e-144 508.8
Cam04g1196 . 15 334 COBRA Gene Family AT5G15630 60.2 1.4e-127 453.0
Cam05g1111 . 19 341 COBRA Gene Family AT5G15630 50.6 4.4e-97 351.7
Cam06g1688 . 19 224 COBRA Gene Family AT5G60950 57.5 3.0e-64 241.9
Cam07g1616 . 27 220 COBRA Gene Family AT5G60950 59.5 1.5e-63 239.6
Cam06g1687 . 51 231 COBRA Gene Family AT5G60950 58.0 2.4e-58 222.2
Cam07g1617 . 27 207 COBRA Gene Family AT5G60950 57.5 2.4e-58 222.2
Cam05g1111 . 12 413 COBRA Gene Family AT1G09790 60.5 4.1e-151 531.6
Cam07g1616 . 25 428 COBRA Gene Family AT1G09790 53.8 7.7e-134 474.2
Cam06g1687 . 41 434 COBRA Gene Family AT1G09790 53.7 2.9e-133 472.2
Cam06g1688 . 32 432 COBRA Gene Family AT1G09790 53.3 7.2e-132 467.6
Cam07g1617 . 8 410 COBRA Gene Family AT1G09790 51.5 2.2e-128 456.1
Cam05g0747 . 35 644 COBRA Gene Family AT4G16120 66.7 1.2e-255 879.4
Cam10g0521 . 59 667 COBRA Gene Family AT4G16120 54.5 8.6e-206 713.8
Cam05g1636 . 46 662 COBRA Gene Family AT4G16120 53.2 1.4e-203 706.4
Cam05g0747 . 11 650 COBRA Gene Family AT3G16860 62.7 1.9e-242 835.5
Cam10g0521 . 59 656 COBRA Gene Family AT3G16860 52.8 8.8e-195 677.2
Cam05g1636 . 39 647 COBRA Gene Family AT3G16860 51.6 1.3e-193 673.3
Cam05g0747 . 7 640 COBRA Gene Family AT5G49270 60.9 7.7e-239 823.5
Cam10g0521 . 59 654 COBRA Gene Family AT5G49270 52.2 6.6e-198 687.6
Cam05g1636 . 35 642 COBRA Gene Family AT5G49270 51.2 8.4e-193 670.6
Cam10g0521 . 55 674 COBRA Gene Family AT3G20580 62.9 3.4e-250 861.3
Cam05g1636 . 12 665 COBRA Gene Family AT3G20580 60.2 3.2e-248 854.7
Cam05g0747 . 28 628 COBRA Gene Family AT3G20580 54.9 3.0e-206 715.3
Cam10g0521 . 59 675 COBRA Gene Family AT4G27110 63.4 1.4e-243 839.3
Cam05g1636 . 39 653 COBRA Gene Family AT4G27110 59.6 4.7e-228 787.7
Cam05g0747 . 25 646 COBRA Gene Family AT4G27110 51.9 2.3e-198 689.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32