Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1197 ATGATTAAAATTAAAGGGGCCAAGGATGTAGAAGCCTTTACTGTGCTGGCAATAATGGAGACAGCGTTTCAACCGAACTCGTCTACAATCACCGATCGTGCTGGCCGTCGCGCCGCCAGGTGTATCGCCGTGCGATTTTCTCTCCGTCTCTCTGTATCTTGCATTCTTTTTTCTCTCAACTCCGCTGATGGTTGGCCGGCTGCCGCACAACACGCTCTCAGTCGTTGGAATCGCCCAGGCGTCGTCGAATCTTTCGCCTTCAGCAGGCAGTTCGCAGTGAGGAGCTTGGGTAAGAATTTTCCTTCACGTTTCTTGTCTGTACTTGTTACCCATGAGGAATTGACTCCGAATTTGGTTACCTTTGATGTTTTGCCTTTAGATTTAAGGGATTGGAGGATTTTAGCACGCTACCAGCGCTCAACCCCGCTGACTGGATGCCAACTAACCATCAACAGGGGTTTACTTAGCACCGAGGAGTTGGGCACGAAAGGTAGTGCCATGGAAGAAGAGATCGGAGGAGAATTCAAGAGGAGTGGTTTCACATTTGATGTAGAGGAAGAGATTCTCCAAAAATGTGTTACGTTCTGTGTTAATTACAATCTAAAGCCTTCAGATATTGTTTCTAGCTGGGAGGTCTACTATCTCAACAGGCAATTAGATGGGTCATTGGTGCAAATTGAACAGATGGATGGGTTCTTACAACATTTACAGAATGAGCAAAAAGAAGCAGTCATTAAAGGGGAACCAGATCTTCATGTTTACTCGAGCAAAGATGTGGAAGCGATTTTGAATGATGAGGATGAAGATCTAAATGGAGACATTCTTAAGACTCCAAATGGGAAATCTCAGAGCCTCCACAAAGAGCGATTGGGTTTGACACCTTACACGAATGAAGGCTTGTTCTCCTCGGGAAAGCCTTCAAAGCATGTTACACCCTTTGGCCAAAGAACAGAGAAGTTTGTTGTGAGGCTCAACATTAATAGCATGCCTGATAAGGTGACGGCTGAAAAGGAAGATAATTGCGAGAATGATGAAGAGGCAATCATCAAGAAGGTTCGACCCCTGCAAGGATGCTTATTGGCAGTCCATGGATCAGGATTTGGACTTGAACCAAATTGCAGGTTCATGTATGACAAGGATGAAGATAGGTTTAATGCTCTTGATAACCGAATCATGAGGCATGCTAAAGCTCTTGCTGCATCTGGGCTCTACGAAGAAGCAGTGGACCCTACAGTTGCTTCACAGAAAAACATGTTTGCAGTGGGCATGATTTATTGTGATGGTGAAGGACACTTGAACGATAAGTCCACCTTGTTGCAAAGCAGTATCACGCATTCAGGGGGGCAGCGAGTTCGTCTAGAATTACAACACTTAAGCCAATTTTCAATCTTTCCTGGCCAGGTAGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGCTTGATTGCGTCCAAACTTGTAGATTCTTTTCCTCTGTCTGCCCCTATAGACCCCATTCTGCCTCCAGCTAAGAAGATAGCTTTGAACCATGATATCCAACCAATTAATCAATCCTCTACACCGTCAGAATTATCGATGATCATTGCATCCGGCCCCTATACAACAACGGACAACTTATTGTTTGAGCCTTTGAATGAGTTATTAGCATATGCAAAAAGAAAAGTTCCCCAGCTACTAATATTGCTTGGACCATTTGTTGATTCTGAACATTCTGATATCAAGAGAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAACTTTGAAGTTTTAAGAAGGGTACAAGATTATGCAGAACACATGGGTCCTGATGCACGTGTACTGTTGATGCCATCTACAAGGGATGCTCATCACGACTTTGTTTTTCCTCAGCCTGCTTTTGACATTCCATCTGATCTCAGACTTCAGATATCCAGTCTCCCAAACCCATGCATTTTGGAAGCAAATCAGGCAACGATAGCCTGCTGCACCATGGATATTCTCAGACACCTTAGTGGAGAAGAGCTGTCAAGAAACCTAACTAAGGGAGCAACCAACGACCGCCTGAGCACACTTGCAAGTCATATACTTCGCCAGCGCAGTTTTTATCCTCTATACCCTCCAGCCGAAGGAGTTCCACTAGACTTTTCACTTGCCCCAAAAGCTCTTGACATTGCTGTAATACCCGATATTCTCATTCTTCCATCCGACATGAAACACTTCGTGAAGGTCATATCCCTTGGTGAAGGAGGTTCAGAGGAAGAGCAAGCGAGATGCATATGTGTGAATCCTGGAAGATTGGCCAAGGGTGAAGGAGGAGTTTCAACATGGCGCTTAAGTTCCAGCAAGAAAGGCGGAGGTGAAATGCACGAGGGCGGAGCAAGAACCTTGAGGGATGACATTTTTATAAAGTTAGCCCTTAATCAATCCAGGATTGGATGA 2421 44.73 MIKIKGAKDVEAFTVLAIMETAFQPNSSTITDRAGRRAARCIAVRFSLRLSVSCILFSLNSADGWPAAAQHALSRWNRPGVVESFAFSRQFAVRSLGKNFPSRFLSVLVTHEELTPNLVTFDVLPLDLRDWRILARYQRSTPLTGCQLTINRGLLSTEELGTKGSAMEEEIGGEFKRSGFTFDVEEEILQKCVTFCVNYNLKPSDIVSSWEVYYLNRQLDGSLVQIEQMDGFLQHLQNEQKEAVIKGEPDLHVYSSKDVEAILNDEDEDLNGDILKTPNGKSQSLHKERLGLTPYTNEGLFSSGKPSKHVTPFGQRTEKFVVRLNINSMPDKVTAEKEDNCENDEEAIIKKVRPLQGCLLAVHGSGFGLEPNCRFMYDKDEDRFNALDNRIMRHAKALAASGLYEEAVDPTVASQKNMFAVGMIYCDGEGHLNDKSTLLQSSITHSGGQRVRLELQHLSQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSAPIDPILPPAKKIALNHDIQPINQSSTPSELSMIIASGPYTTTDNLLFEPLNELLAYAKRKVPQLLILLGPFVDSEHSDIKRGTVEMSFEEIFNFEVLRRVQDYAEHMGPDARVLLMPSTRDAHHDFVFPQPAFDIPSDLRLQISSLPNPCILEANQATIACCTMDILRHLSGEELSRNLTKGATNDRLSTLASHILRQRSFYPLYPPAEGVPLDFSLAPKALDIAVIPDILILPSDMKHFVKVISLGEGGSEEEQARCICVNPGRLAKGEGGVSTWRLSSSKKGGGEMHEGGARTLRDDIFIKLALNQSRIG 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26046422 26058169 - CaPI482276_04g011970.1 Cam04g1197 125275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1197 806 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 168 776 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
Cam04g1197 806 Gene3D - 165 243 IPR043034 -
Cam04g1197 806 Pfam DNA polymerase alpha/epsilon subunit B 527 736 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cam04g1197 806 Pfam DNA polymerase alpha subunit B, OB domain 387 487 IPR054300 -
Cam04g1197 806 Pfam DNA polymerase alpha subunit B N-terminal 170 218 IPR013627 -
Cam04g1197 806 FunFam DNA polymerase alpha subunit B 507 671 - -
Cam04g1197 806 Gene3D - 679 794 - -
Cam04g1197 806 Gene3D - 505 676 - -
Cam04g1197 806 FunFam DNA polymerase alpha subunit B 166 240 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1197 K02321 - csv:101206268 1126.31