Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1236 ATGGGGTGTGTGAACTCGAAGCAGGCAGTATCCGTCACGCCTGCATTCGATCACTCCGGTGTGTTTCGAGACAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGAGTTGGGTTCGGGGAGATTGAGAAGAGTTCGAAGCCGAAGGCTAAGATGAAGACGAAGGGGTCCAGTGAGTTTAATGGGGTTGGGTGCGAGTTTGGTGAGTCGGGGAGAGCGAGTTCAAATGGTGGAGGAAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAGGGGAACAAGTGGCGGCGGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTTGAAACGGGAAGGATCGTTGCTCTAAAGAAAGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTACCTCGTGTTTGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGCCCCGATATCACTTTTAGTGAATCGCAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGTGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGATATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGACAACCTCTAACGAGTCGCGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCAGAACTTTTAGTTGGAAAACCTATTCTTCAAGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTGTGAAACCGTATGCATGCGATCCATCAAGCATGCCTATATATCCACCTAACAAAGAGATTGATGCCAAACAAAGAGAGGAGACTAGAAGGAAAAAAGGTAGTGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATTTTAAAGAAGAAAAAGTTATCAAAGGTGTTGAGGCGCAAAAGCTGTCTATTGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCGACATCAAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATCTTATTCCAGGTCAATTTCAAGAGGACACTTAATTAATGGGCTGGACGATTCTACTACATTGCATTCAAGAAGCAAGTTTCATGAAAAGGGTGACATGTCGTCCATCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCAAAGGTTGTGACAAGGAACCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCATCGGCACTGTATATGCGAGATGAAATGGAAGCTAAGAGAAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAAACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGGTCATGGTTTCAAAGAGGTAAAAATTGA 2079 44.93 MGCVNSKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRVGFGEIEKSSKPKAKMKTKGSSEFNGVGCEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPPTTVNLLETLLSVEPYKRGVASSALTSEYFSVKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNFKEEKVIKGVEAQKLSIDKLEETIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSYSRSISRGHLINGLDDSTTLHSRSKFHEKGDMSSISRSSSKGHESNERSKVVTRNQWGKFERPDSFDTSDEYHSQEFASALYMRDEMEAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLNRHERHIRQTVRRSWFQRGKN 692
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 26386648 26391262 + CaPI482276_04g012360.1 Cam04g1236 125314
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1236 692 MobiDBLite consensus disorder prediction 41 55 - -
Cam04g1236 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1236 692 PANTHER CELL DIVISION PROTEIN KINASE 127 411 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cam04g1236 692 MobiDBLite consensus disorder prediction 592 607 - -
Cam04g1236 692 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524(InterPro)
Cam04g1236 692 FunFam probable serine/threonine-protein kinase At1g54610 210 450 - -
Cam04g1236 692 MobiDBLite consensus disorder prediction 424 455 - -
Cam04g1236 692 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Cam04g1236 692 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Cam04g1236 692 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Cam04g1236 692 CDD STKc_CDK9_like 127 411 - -
Cam04g1236 692 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1236 692 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1236 692 MobiDBLite consensus disorder prediction 25 58 - -
Cam04g1236 692 MobiDBLite consensus disorder prediction 431 455 - -
Cam04g1236 692 SMART serkin_6 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1236 692 MobiDBLite consensus disorder prediction 575 607 - -
Cam04g1236 692 SUPERFAMILY Protein kinase-like (PK-like) 121 413 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1236 Cam-Chr4:26386648 Cam05g1097 Cam-Chr5:10044173 1.50E-160 dispersed
Cam02g2482 Cam-Chr2:37278426 Cam04g1236 Cam-Chr4:26386648 5.00E-93 transposed
Cam04g0113 Cam-Chr4:3381480 Cam04g1236 Cam-Chr4:26386648 6.80E-50 transposed
Cam06g1591 Cam-Chr6:27375969 Cam04g1236 Cam-Chr4:26386648 5.10E-55 transposed
Cam08g2196 Cam-Chr8:27313052 Cam04g1236 Cam-Chr4:26386648 2.30E-62 transposed
Cam11g0316 Cam-Chr11:4680544 Cam04g1236 Cam-Chr4:26386648 3.90E-30 transposed
Cam11g0480 Cam-Chr11:6326329 Cam04g1236 Cam-Chr4:26386648 7.20E-186 transposed
Cam11g1415 Cam-Chr11:26857887 Cam04g1236 Cam-Chr4:26386648 3.50E-61 transposed
Cam10g1155 Cam-Chr10:24747366 Cam04g1236 Cam-Chr4:26386648 2.70E-40 wgd
Cam04g1236 Cam-Chr4:26386648 Cam08g1470 Cam-Chr8:20954724 2.60E-43 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85142 PF00069 Pkinase 8.60E-68 CL0016 Cam PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1236 - - - 0.0