Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g1236 | ATGGGGTGTGTGAACTCGAAGCAGGCAGTATCCGTCACGCCTGCATTCGATCACTCCGGTGTGTTTCGAGACAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGAGTTGGGTTCGGGGAGATTGAGAAGAGTTCGAAGCCGAAGGCTAAGATGAAGACGAAGGGGTCCAGTGAGTTTAATGGGGTTGGGTGCGAGTTTGGTGAGTCGGGGAGAGCGAGTTCAAATGGTGGAGGAAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAGGGGAACAAGTGGCGGCGGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTTGAAACGGGAAGGATCGTTGCTCTAAAGAAAGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTACCTCGTGTTTGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGCCCCGATATCACTTTTAGTGAATCGCAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGTGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGATATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGACAACCTCTAACGAGTCGCGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCAGAACTTTTAGTTGGAAAACCTATTCTTCAAGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTGTGAAACCGTATGCATGCGATCCATCAAGCATGCCTATATATCCACCTAACAAAGAGATTGATGCCAAACAAAGAGAGGAGACTAGAAGGAAAAAAGGTAGTGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATTTTAAAGAAGAAAAAGTTATCAAAGGTGTTGAGGCGCAAAAGCTGTCTATTGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCGACATCAAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATCTTATTCCAGGTCAATTTCAAGAGGACACTTAATTAATGGGCTGGACGATTCTACTACATTGCATTCAAGAAGCAAGTTTCATGAAAAGGGTGACATGTCGTCCATCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCAAAGGTTGTGACAAGGAACCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCATCGGCACTGTATATGCGAGATGAAATGGAAGCTAAGAGAAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAAACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGGTCATGGTTTCAAAGAGGTAAAAATTGA | 2079 | 44.93 | MGCVNSKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRVGFGEIEKSSKPKAKMKTKGSSEFNGVGCEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPPTTVNLLETLLSVEPYKRGVASSALTSEYFSVKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNFKEEKVIKGVEAQKLSIDKLEETIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSYSRSISRGHLINGLDDSTTLHSRSKFHEKGDMSSISRSSSKGHESNERSKVVTRNQWGKFERPDSFDTSDEYHSQEFASALYMRDEMEAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLNRHERHIRQTVRRSWFQRGKN | 692 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26386648 | 26391262 | + | CaPI482276_04g012360.1 | Cam04g1236 | 125314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g1236 | 692 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
Cam04g1236 | 692 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 247 | 259 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam04g1236 | 692 | PANTHER | CELL DIVISION PROTEIN KINASE | 127 | 411 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cam04g1236 | 692 | MobiDBLite | consensus disorder prediction | 592 | 607 | - | - | |
Cam04g1236 | 692 | ProSitePatterns | Protein kinases ATP-binding region signature. | 133 | 156 | IPR017441 | GO:0005524(InterPro) | |
Cam04g1236 | 692 | FunFam | probable serine/threonine-protein kinase At1g54610 | 210 | 450 | - | - | |
Cam04g1236 | 692 | MobiDBLite | consensus disorder prediction | 424 | 455 | - | - | |
Cam04g1236 | 692 | FunFam | probable serine/threonine-protein kinase At1g54610 | 114 | 209 | - | - | |
Cam04g1236 | 692 | Gene3D | Transferase(Phosphotransferase) domain 1 | 210 | 450 | - | - | |
Cam04g1236 | 692 | Gene3D | Phosphorylase Kinase; domain 1 | 114 | 209 | - | - | |
Cam04g1236 | 692 | CDD | STKc_CDK9_like | 127 | 411 | - | - | |
Cam04g1236 | 692 | ProSiteProfiles | Protein kinase domain profile. | 127 | 411 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam04g1236 | 692 | Pfam | Protein kinase domain | 127 | 411 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam04g1236 | 692 | MobiDBLite | consensus disorder prediction | 25 | 58 | - | - | |
Cam04g1236 | 692 | MobiDBLite | consensus disorder prediction | 431 | 455 | - | - | |
Cam04g1236 | 692 | SMART | serkin_6 | 127 | 411 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam04g1236 | 692 | MobiDBLite | consensus disorder prediction | 575 | 607 | - | - | |
Cam04g1236 | 692 | SUPERFAMILY | Protein kinase-like (PK-like) | 121 | 413 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g1236 | Cam-Chr4:26386648 | Cam05g1097 | Cam-Chr5:10044173 | 1.50E-160 | dispersed | |
Cam02g2482 | Cam-Chr2:37278426 | Cam04g1236 | Cam-Chr4:26386648 | 5.00E-93 | transposed | |
Cam04g0113 | Cam-Chr4:3381480 | Cam04g1236 | Cam-Chr4:26386648 | 6.80E-50 | transposed | |
Cam06g1591 | Cam-Chr6:27375969 | Cam04g1236 | Cam-Chr4:26386648 | 5.10E-55 | transposed | |
Cam08g2196 | Cam-Chr8:27313052 | Cam04g1236 | Cam-Chr4:26386648 | 2.30E-62 | transposed | |
Cam11g0316 | Cam-Chr11:4680544 | Cam04g1236 | Cam-Chr4:26386648 | 3.90E-30 | transposed | |
Cam11g0480 | Cam-Chr11:6326329 | Cam04g1236 | Cam-Chr4:26386648 | 7.20E-186 | transposed | |
Cam11g1415 | Cam-Chr11:26857887 | Cam04g1236 | Cam-Chr4:26386648 | 3.50E-61 | transposed | |
Cam10g1155 | Cam-Chr10:24747366 | Cam04g1236 | Cam-Chr4:26386648 | 2.70E-40 | wgd | |
Cam04g1236 | Cam-Chr4:26386648 | Cam08g1470 | Cam-Chr8:20954724 | 2.60E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85142 | PF00069 | Pkinase | 8.60E-68 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g1236 | - | - | - | 0.0 |