Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1237 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGATATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGCGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTATCTCCTGTTAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACACCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGGTGGAGGAAAAGGGTGGAGGCCTATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACCGCATTTGTGCATTCAAACAGTTTGAAGCTCAATTGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTCCCTCAACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAACGGTACATGCTAACGAAACAGATTATATTGACCATCAACCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTGTAGCTAAACAGAAAACCAAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGTTTTATCCACCATCAAGGCATACTGGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCAACTTTAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTCTTCAGTATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCAACACATCTTTCTTGCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCAGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATCCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCCACACCTGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAACTGGGATGGGCGTGGCTACTACAGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTCTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATAATGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGATAGCCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCAGTTAGAAATGGAGATGAGAAAGATGAGAAAATAG 3882 42.89 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLGGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNCDEVDVLWDAKEQFSKDFRAEVLFLDANHVVPNNRPSTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQTVHANETDYIDHQPVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIVAKQKTKQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLFYPPSRHTGDSATAISSPTKDFYSYSTLKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNALQYQDPTLPLSATTLLQPPALQANTSFLHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTPKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNPGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPPQPTTGPLPPVPSSSSKPSGGMTPHLGAKGVSSSTDVKTSSIVRGRGFSRSTGMGVATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEIMKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKMRK 1293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26396716 26406433 + CaPI482276_04g012370.1 Cam04g1237 125315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1237 1293 Coils Coil 1180 1200 - -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 660 682 - -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 640 682 - -
Cam04g1237 1293 PANTHER FORMIN-J 773 1291 IPR051144 -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 790 808 - -
Cam04g1237 1293 Pfam Formin Homology 2 Domain 905 1273 IPR015425 -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 707 723 - -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 726 744 - -
Cam04g1237 1293 SUPERFAMILY Formin homology 2 domain (FH2 domain) 795 1293 - -
Cam04g1237 1293 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cam04g1237 1293 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Cam04g1237 1293 SMART PTEN_C2_2 198 338 IPR014020 -
Cam04g1237 1293 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 188 IPR029021 -
Cam04g1237 1293 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cam04g1237 1293 Gene3D - 205 336 - -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 810 834 - -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 869 897 - -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 707 897 - -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 835 855 - -
Cam04g1237 1293 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cam04g1237 1293 ProSiteProfiles Formin homology-2 (FH2) domain profile. 897 1293 IPR015425 -
Cam04g1237 1293 MobiDBLite consensus disorder prediction 753 780 - -
Cam04g1237 1293 Gene3D Formin, FH2 domain 899 1284 IPR042201 -
Cam04g1237 1293 SMART it6_source 897 1292 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1237 K28090 - - csv:101221127 2140.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1237 Cam-Chr4:26396716 Cam05g1798 Cam-Chr5:26764496 2.20E-250 dispersed
Cam02g0859 Cam-Chr2:11321420 Cam04g1237 Cam-Chr4:26396716 9.10E-28 transposed
Cam04g1237 Cam-Chr4:26396716 Cam06g1735 Cam-Chr6:28639645 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam07g0241 . 180 1054 FH2 protein (formin) Gene Family AT3G25500 51.8 1.1e-191 667.5
Cam11g0100 . 451 927 FH2 protein (formin) Gene Family AT3G25500 66.9 1.6e-166 583.9
Cam02g1267 . 442 898 FH2 protein (formin) Gene Family AT3G25500 60.1 8.1e-142 501.9
Cam03g1721 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.0e-104 377.1
Cam07g0241 . 617 1071 FH2 protein (formin) Gene Family AT2G43800 60.3 5.3e-142 502.3
Cam02g1267 . 476 914 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Cam02g0859 . 279 591 FH2 protein (formin) Gene Family AT4G15200 52.1 3.2e-50 196.4
Cam05g1653 . 552 698 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cam05g1653 . 553 989 FH2 protein (formin) Gene Family AT5G54650 69.2 3.3e-168 589.3
Cam02g0859 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 4.1e-158 555.8
Cam07g0241 . 628 1029 FH2 protein (formin) Gene Family AT5G54650 50.8 2.9e-103 373.6
Cam02g1267 . 31 917 FH2 protein (formin) Gene Family AT5G67470 58.2 9.8e-237 817.0
Cam07g0241 . 609 1071 FH2 protein (formin) Gene Family AT5G67470 58.9 9.7e-136 481.5
Cam11g0100 . 464 909 FH2 protein (formin) Gene Family AT5G67470 60.6 8.5e-132 468.4
Cam03g1721 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 8.9e-105 378.6
Cam05g2691 . 348 832 FH2 protein (formin) Gene Family AT1G59910 52.6 2.5e-126 450.3
Cam07g0241 . 649 1030 FH2 protein (formin) Gene Family AT5G48360 52.6 4.0e-101 366.3
Cam02g1267 . 500 875 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Cam02g1267 . 480 874 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Cam05g1653 . 558 972 FH2 protein (formin) Gene Family AT3G05470 50.6 4.6e-106 382.9
Cam07g0233 . 962 1273 FH2 protein (formin) Gene Family AT1G42980 51.1 2.0e-69 259.6
Cam07g0233 . 1 1277 FH2 protein (formin) Gene Family AT1G31810 67.9 0.0e+00 1225.3
Cam06g1369 . 1 1244 FH2 protein (formin) Gene Family AT1G31810 50.6 6.9e-241 831.2
Cam06g1735 . 1401 1722 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cam04g1237 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.4 1.1e-119 427.9
Cam05g1798 . 1088 1410 FH2 protein (formin) Gene Family AT5G07650 65.0 3.6e-110 396.4
Cam06g1369 . 934 1244 FH2 protein (formin) Gene Family AT5G07650 63.3 6.8e-109 392.1
Cam07g0233 . 946 1277 FH2 protein (formin) Gene Family AT5G07650 59.6 4.4e-108 389.4
Cam06g1735 . 1328 1715 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cam04g1237 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.2 2.9e-128 456.1
Cam05g1798 . 1012 1402 FH2 protein (formin) Gene Family AT5G07770 59.4 1.2e-118 424.1
Cam06g1369 . 857 1245 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Cam07g0233 . 882 1271 FH2 protein (formin) Gene Family AT5G07770 55.2 3.6e-115 412.5
Cam05g1798 . 1004 1410 FH2 protein (formin) Gene Family AT3G32400 76.2 1.3e-169 593.2
Cam06g1369 . 864 1245 FH2 protein (formin) Gene Family AT3G32400 69.8 6.8e-147 517.7
Cam06g1735 . 1328 1722 FH2 protein (formin) Gene Family AT3G32400 65.2 8.6e-142 500.7
Cam07g0233 . 882 1276 FH2 protein (formin) Gene Family AT3G32400 65.5 1.2e-140 496.9
Cam04g1237 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 58.1 8.0e-132 467.6
Cam05g1798 . 1 1410 FH2 protein (formin) Gene Family AT2G25050 51.5 0.0e+00 1155.6
Cam06g1369 . 1 1245 FH2 protein (formin) Gene Family AT2G25050 51.6 4.4e-290 994.6
Cam06g1735 . 1329 1722 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cam04g1237 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 58.1 2.1e-113 406.4
Cam05g1798 . 1013 1403 FH2 protein (formin) Gene Family AT5G07780 54.3 3.3e-103 372.5
Cam07g0233 . 883 1272 FH2 protein (formin) Gene Family AT5G07780 52.0 1.1e-101 367.5
Cam06g1369 . 864 1245 FH2 protein (formin) Gene Family AT5G07780 54.1 2.4e-101 366.3
Cam06g1735 . 1 1731 FH2 protein (formin) Gene Family AT5G07740 59.3 0.0e+00 1119.8
Cam06g1735 . 1400 1729 FH2 protein (formin) Gene Family AT5G07760 74.4 3.2e-128 456.4
Cam04g1237 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.6 2.6e-117 420.2
Cam06g1369 . 933 1245 FH2 protein (formin) Gene Family AT5G07760 65.3 1.2e-109 394.8
Cam05g1798 . 1087 1419 FH2 protein (formin) Gene Family AT5G07760 64.0 2.0e-109 394.0
Cam07g0233 . 956 1277 FH2 protein (formin) Gene Family AT5G07760 60.1 5.0e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82