Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1240 ATGCAAATTAACCAAACCGCCATTCCCGCCATTGGAAGAAGCTCCAGAGTTAGGCAACAATTTCTTTTCTCTGTATTAAAGTGCTGTCCATCTGTTCGTAATCTTGCGAAAATCCATGCTCAAATAGTCGTCAGCGGCTTTGCCCAGAAAAATTACATCCTTGTCAATCTTTTGTCGCTCTATATCTCTTTTGGTTCTCTTGGAAGTGCCCAGAAAGTTTTCGAGGATATTAGGACACCGAGTACGACTGTGTGGAACCAGATAATTAGAGGCCATGCACGGAGCAAAACGCCACAAGAATCGATTGAGCTGTTCAAACGAATGACAGTGGCGGAAGTTGAGGCTGATGGGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGTGAGATCGAGGTTATTCAGAGAGGGGGAACAGATTCATGGGAGAGTTTTAGCAAATGGGTATTGGTCCAACTTGTATGTTAGAACGAATTTGATCAATTTATACGCAAATGGTGGAGGTCGAGGGGATTTTGATCTTAAGCGTGCGCGTTACATGTTTGATGAAATGCCTGACACAAATGTCGTGGGTTGGAATTCCTTGCTCGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTTGACGAGATGCCTGAAAGGAATGTCCAGACATGGACTACAATGGTTGCAGGGCTTGCTCAAAATGGCCATTGTAAGCTAGCTTTGTCACTATTTAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAAGTGGCGTTGGTGGCTGCATTGTCATCTTGTGCTGAATTGGGAGACTTGACATTGGGAAAATGGATTCATAGGTATGTTGAAAGAACATGGCGGAGTAGACACTTCCCAGTCTTGGTGTCTCTGAACAATGCTCTGATGCATATGTATGCAAGTTGTGGTGTTATGGATTTAGCATATAAAGTGTTTGAAGAAATGCCCCAACGAAACACCGTGTCTTGGTCAAGCATTATCACTGGGTTTGCGAAACAGGGTTGTGGAGAAGAAGCCATTAAAGTCTTTCAGTTGATGCTGTGCTCTGGCCAAAATGAAGTTAGACCTGACGAGATAACCTTCATCGGAGTTCTCACTGCTTGTAGTCATGCCGGTTTGATCATTGACGGCATCCGAGTTTTCCAGTCTATGCACAAAACTTTCGGAGTCATCCCGCAGATTGAGCATTATGGATGCATGGTTGATCTCTTAAGCCGTGCAGGTTTACTGAGTGAAGCGTTGAGGCTGATTGAAAGTATGCCAATGAAGCCAAATAATGCTGTGTGGGGAGCACTTCTCAGCGGCTGTAGAATTCACAAGAACGACGAGATCGCATCCCATGTTGCGAAACAATTGGCTTTCGAAATCGATCCCAGCAAACAGGCTGCTGGATACTTCATGCTCCTAGCTAATGTTTATGCTGCAGACAAACGTTGGCGAGACACTGCCATTATGAGACAGAACATGCTCGACATAGGAGTGAAGAAACCTTCAGGAAGAAGTTGGATTGAGATTAATGGAGTTGCATGTGATTTCGTGGCGGGGGATGAGACTCATAAGGATGTGAGTTTAATTTATGAGATGCTTGGTAACATAACCAGCCAAGCCCGGATGGAAAGCTGCAAATCAGAGACAATATCAGAGGCATTGGTTGGTTCTGGTTTAACGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCTGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATCGATATTATACTCTCGGAAGTTGATCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGATATGGCAATTGCTGCGACCCATCAGGAAGATGAGTCTGGTATTGCCGCCGCACTTGTAGAGCCTGCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGTCGAACAGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAGCTGTGAAAAGTAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGATGAAAATCATCAAGAAACTAGTCATCGTGCAGTTCATCTTCCCTCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGGAACATCAATGAAGAAAATTGCTCTCAAGCCCTTGTGCATCCTCGAGATGGATCTCAGGTTGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCGGAAGGTATGATGTCGGCGCAACTGTACCAAAAAAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCGTCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAACTAGCACTACTCATATTCATTCATGGCCATCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAACGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAACTACTATCAAGGGATTCCTCTCATGAGGATGATGGGAAGCAAGCAAGTGCTCATATTTACTGCTTGCAATCTCAATGTTGGCAAGAGATCCGATTCTGCCTGCTGTTACATGTCCATTTGCTTGCACCAGGTCCTTGTAGCCTTGCGGTTACTGGTGGCTTGAAACCGCTTCTCTTCAGAAGAAGAATAGCTTGTTGGAATTTTATTCAAAAGAGCCAAGATCTTACCCTACCCCCAAACCCAACTTATGTAGTTTGTGAAAGATCTGCATCAAAAGATCGACCAATTTTATCAGAACTGAGCTTGTCTCAGTTCCAATCTGCTGCTACTGGAATATCCATCTATAGTATAATAAATCCAAACAAGAATACGAGCGGCCAAAACGAGGCATTCAGCATAGCTGCAATGCTTCTTGCTGCCTCTCTCTCTGAGATACAAGCTAAACACTGCCATCTTGTTTCATTTTCCAATTTGAAGGCAGTACTTTCTGTTGAGATAATAACAGTGATCGATTCAATTGTGCGACTTGTTGCAGTAGTTGACTGA 3846 43.58 MQINQTAIPAIGRSSRVRQQFLFSVLKCCPSVRNLAKIHAQIVVSGFAQKNYILVNLLSLYISFGSLGSAQKVFEDIRTPSTTVWNQIIRGHARSKTPQESIELFKRMTVAEVEADGFTYSFLLSACVRSRLFREGEQIHGRVLANGYWSNLYVRTNLINLYANGGGRGDFDLKRARYMFDEMPDTNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVQTWTTMVAGLAQNGHCKLALSLFNQMRRAGVELDQVALVAALSSCAELGDLTLGKWIHRYVERTWRSRHFPVLVSLNNALMHMYASCGVMDLAYKVFEEMPQRNTVSWSSIITGFAKQGCGEEAIKVFQLMLCSGQNEVRPDEITFIGVLTACSHAGLIIDGIRVFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLSEALRLIESMPMKPNNAVWGALLSGCRIHKNDEIASHVAKQLAFEIDPSKQAAGYFMLLANVYAADKRWRDTAIMRQNMLDIGVKKPSGRSWIEINGVACDFVAGDETHKDVSLIYEMLGNITSQARMESCKSETISEALVGSGLTVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMAIAATHQEDESGIAAALVEPAAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRAVKSKAVDVEDNAKRLLLDENHQETSHRAVHLPSIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQALVHPRDGSQVDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTSTTHIHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGKQASAHIYCLQSQCWQEIRFCLLLHVHLLAPGPCSLAVTGGLKPLLFRRRIACWNFIQKSQDLTLPPNPTYVVCERSASKDRPILSELSLSQFQSAATGISIYSIINPNKNTSGQNEAFSIAAMLLAASLSEIQAKHCHLVSFSNLKAVLSVEIITVIDSIVRLVAVVD 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26417010 26426288 - CaPI482276_04g012400.1 Cam04g1240 125318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1240 1281 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cam04g1240 1281 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 100 206 - -
Cam04g1240 1281 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Cam04g1240 1281 MobiDBLite consensus disorder prediction 1088 1104 - -
Cam04g1240 1281 NCBIfam pentatricopeptide repeat 221 253 IPR002885 -
Cam04g1240 1281 NCBIfam pentatricopeptide repeat 325 354 IPR002885 -
Cam04g1240 1281 NCBIfam pentatricopeptide repeat 191 219 IPR002885 -
Cam04g1240 1281 Gene3D - 593 806 - -
Cam04g1240 1281 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Cam04g1240 1281 ProSiteProfiles CCT domain profile. 1032 1074 IPR010402 GO:0005515(InterPro)
Cam04g1240 1281 SMART REC_2 593 708 IPR001789 GO:0000160(InterPro)
Cam04g1240 1281 SUPERFAMILY CheY-like 591 719 IPR011006 -
Cam04g1240 1281 MobiDBLite consensus disorder prediction 871 897 - -
Cam04g1240 1281 Pfam PPR repeat 400 425 IPR002885 -
Cam04g1240 1281 Pfam PPR repeat 118 147 IPR002885 -
Cam04g1240 1281 Pfam PPR repeat 325 354 IPR002885 -
Cam04g1240 1281 Pfam PPR repeat 84 109 IPR002885 -
Cam04g1240 1281 Pfam PPR repeat 297 323 IPR002885 -
Cam04g1240 1281 Pfam PPR repeat 221 250 IPR002885 -
Cam04g1240 1281 Pfam CCT motif 1032 1074 IPR010402 GO:0005515(InterPro)
Cam04g1240 1281 MobiDBLite consensus disorder prediction 1083 1111 - -
Cam04g1240 1281 FunFam Pentatricopeptide repeat-containing protein chloroplastic 138 288 - -
Cam04g1240 1281 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 296 531 - -
Cam04g1240 1281 ProSiteProfiles Response regulatory domain profile. 594 712 IPR001789 GO:0000160(InterPro)
Cam04g1240 1281 Pfam E motif 443 508 IPR046848 -
Cam04g1240 1281 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Cam04g1240 1281 Pfam PPR repeat family 187 220 IPR002885 -
Cam04g1240 1281 MobiDBLite consensus disorder prediction 738 760 - -
Cam04g1240 1281 Gene3D Tetratricopeptide repeat domain 44 168 IPR011990 GO:0005515(InterPro)
Cam04g1240 1281 Gene3D Tetratricopeptide repeat domain 169 282 IPR011990 GO:0005515(InterPro)
Cam04g1240 1281 MobiDBLite consensus disorder prediction 871 905 - -
Cam04g1240 1281 MobiDBLite consensus disorder prediction 791 814 - -
Cam04g1240 1281 Pfam Response regulator receiver domain 595 706 IPR001789 GO:0000160(InterPro)
Cam04g1240 1281 Gene3D Tetratricopeptide repeat domain 283 355 IPR011990 GO:0005515(InterPro)
Cam04g1240 1281 Gene3D Tetratricopeptide repeat domain 356 525 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0853 Cam-Chr4:22739859 Cam04g1240 Cam-Chr4:26417010 2.10E-12 dispersed
Cam04g1240 Cam-Chr4:26417010 Cam09g2177 Cam-Chr9:36285358 4.70E-91 dispersed
Cam11g0360 Cam-Chr11:5114880 Cam04g1240 Cam-Chr4:26417010 1.80E-15 dispersed
Cam11g1260 Cam-Chr11:25068917 Cam04g1240 Cam-Chr4:26417010 9.80E-06 dispersed
Cam04g1240 Cam-Chr4:26417010 Cam07g0899 Cam-Chr7:22073272 3.20E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51802 PF00072 Response_reg 2.80E-16 CL0304 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1240 K12127 - csv:101220107 975.696