Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1243 ATGAGGCAGACTGAGGATGATGATCACAAGAACCTATCGGACAAGGATTCTCACTGTGATTTGAAGAGCAACCACGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATATTTTCGGTCTCTGTGGTTCTTAGAGATCCACCATCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCCTACGGTTATACAGCCAGTTGATAAACTGATTAGTGGCCTTCTTTCTGCCAAACATGGGGTTGATTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCCTCTTCTTACTTAATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTAAAGTCTAACGGCAGTAGCAGCTCCTCAGATTGTAAATATGTTGTTTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTCGCTTCGACGTTTCTTTATGCTCTCCTCACAAATCGTGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAGATTTCCCATTAAAAGATGAGTTCAGCAAATTCAACCAGAACTCTACTAATTGCTATGGGAAAATAATGAAGAATAGCATGACCCCAGATTCAAGTGGAATGATCTTGCCAGCTGTAGTTTATCTTCATTTGGTCCATGATTATGATGCTGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTTGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCGTGAATTCGGTTTGGGGTCTGATTACAAGATATTATCAGGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACCGAGAGGCAAACGAATGTTGTTGCTCCAGCTAGTAATCAAAAGTCAAAGGCTGTGCTGATAACTTCCTTGAGCGCTGGTTACTTCGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACGGTAACGGGAGAGAGAATTAGTTTCTTCCAACCAAGTCATGAGGAACACCAGCAAACGGAGAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTCGGATACGTGGCTCAGGGTCTTGGGGGTCTGAAACCATGGATATTGTACAAACCTGAAAATCGTACTGCGCCCGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGACTTAAGTTGGTTGATCAATATGATTGA 1701 42.8 MRQTEDDDHKNLSDKDSHCDLKSNHELKCGFSSIRVMGMFVVLMMFISVIFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPVDSKVGDLPTVIQPVDKLISGLLSAKHGVDSCLSRYNSVAYQHKLAYEPSSYLISKLRSYEDLHKRCGVHTESYNKTLEQLKSNGSSSSSDCKYVVWISFSGLGNRILTLASTFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKDEFSKFNQNSTNCYGKIMKNSMTPDSSGMILPAVVYLHLVHDYDADDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNVVAPASNQKSKAVLITSLSAGYFEKLRDIYWENPTVTGERISFFQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQYD 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26432944 26435472 + CaPI482276_04g012430.1 Cam04g1243 125321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1243 566 PANTHER FUCOSYLTRANSFERASE 2-RELATED 31 564 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cam04g1243 566 Pfam Xyloglucan fucosyltransferase 91 535 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cam04g1243 566 Gene3D - 349 513 - -
Cam04g1243 566 Gene3D - 169 222 - -
Cam04g1243 566 FunFam Galactoside 2-alpha-L-fucosyltransferase 170 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1243 K13681 - - csv:101219153 1066.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1243 Cam-Chr4:26432944 Cam07g1102 Cam-Chr7:25511120 2.60E-142 dispersed
Cam04g1243 Cam-Chr4:26432944 Cam05g2605 Cam-Chr5:33662613 2.40E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2605 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.1 5.4e-158 554.7
Cam04g1243 . 94 564 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 8.4e-151 530.8
Cam05g2605 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.2e-166 581.3
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 5.6e-160 561.2
Cam05g2605 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.4 1.6e-137 486.5
Cam04g1243 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 7.0e-133 471.1
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 2.7e-183 638.6
Cam08g1317 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 3.9e-169 591.3
Cam05g2605 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.0e-127 452.6
Cam05g2605 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 7.5e-182 634.0
Cam04g1243 . 98 565 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.2e-169 592.0
Cam05g2605 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 1.6e-200 696.0
Cam04g1243 . 40 562 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 2.3e-188 655.6
Cam07g1102 . 52 545 Xyloglucan Fucosyltransferase1 AT2G03220 52.2 1.8e-151 533.1
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.2e-154 543.5
Cam04g1243 . 76 565 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 7.3e-144 507.7
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 3.5e-149 525.4
Cam04g1243 . 87 565 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 4.7e-138 488.4
Cam05g2605 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.9 1.5e-152 536.6
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 4.9e-143 505.0
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 5.7e-186 647.5
Cam05g2605 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.0e-127 452.6
Cam05g2605 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 7.5e-182 634.0
Cam04g1243 . 98 565 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.2e-169 592.0
Cam05g2605 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 1.6e-200 696.0
Cam04g1243 . 40 562 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 2.3e-188 655.6
Cam07g1102 . 52 545 Xyloglucan Fucosyltransferase1 AT2G03220 52.2 1.8e-151 533.1
Cam05g2605 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 7.5e-182 634.0
Cam04g1243 . 98 565 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.2e-169 592.0
Cam05g2605 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.0e-127 452.6
Cam05g2605 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.9 1.5e-152 536.6
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 4.9e-143 505.0
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 3.5e-149 525.4
Cam04g1243 . 87 565 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 4.7e-138 488.4
Cam05g2605 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.1 5.4e-158 554.7
Cam04g1243 . 94 564 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 8.4e-151 530.8
Cam05g2605 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.2e-166 581.3
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 5.6e-160 561.2
Cam05g2605 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.4 1.6e-137 486.5
Cam04g1243 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 7.0e-133 471.1
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.2e-154 543.5
Cam04g1243 . 76 565 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 7.3e-144 507.7
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 5.7e-186 647.5
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 2.7e-183 638.6
Cam08g1317 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 3.9e-169 591.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29