Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1247 ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTGGGGCTTGTGGTTATGGGAATGTATATAGCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATCGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGTCATTACTGGTGATGGTCACTCACTTGTGTCTTACAATGTTGCCCCTTCTAGTTGGTCATTTGGACAAACCTTTGTTGGTAGACAGTTCCCTTAA 723 47.72 MGFVGILVMGFLCLCSLVHGYGGRWINDAHATFYGGPDASGTLGGACGYGNVYSADYGIKTTALSPALFDNGLSCGACFEVRCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVVPVAYRRVKCARKGGIKFRIEGNPNFNLVLISNVGGAGDVHAVYIKGGRNGWKAMVRNWGQNWQSNDNLVGQSLSFKVITGDGHSLVSYNVAPSSWSFGQTFVGRQFP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26462635 26465203 + CaPI482276_04g012470.1 Cam04g1247 125325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1247 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Cam04g1247 240 CDD DPBB_EXPA_N 28 142 - -
Cam04g1247 240 FunFam Expansin 147 239 - -
Cam04g1247 240 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cam04g1247 240 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Cam04g1247 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Cam04g1247 240 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cam04g1247 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Cam04g1247 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Cam04g1247 240 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 Gene3D - 16 143 IPR036908 -
Cam04g1247 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 147 IPR007112 -
Cam04g1247 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Cam04g1247 240 Pfam Lytic transglycolase 61 137 IPR009009 -
Cam04g1247 240 SUPERFAMILY Barwin-like endoglucanases 25 165 IPR036908 -
Cam04g1247 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Cam04g1247 240 Gene3D - 145 239 IPR036749 -
Cam04g1247 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Cam04g1247 240 SMART dpbb_1 61 137 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1247 Cam-Chr4:26462635 Cam11g0988 Cam-Chr11:17050594 4.20E-86 dispersed
Cam04g1247 Cam-Chr4:26462635 Cam05g2614 Cam-Chr5:33721645 3.30E-91 wgd
Cam04g1247 Cam-Chr4:26462635 Cam06g1754 Cam-Chr6:28789906 2.50E-94 wgd
Cam04g1247 Cam-Chr4:26462635 Cam09g1863 Cam-Chr9:33177856 1.40E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1247 - - - 0.0