Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1264 ATGGCAGAGGAAAACAGAGTGGTGCTTTACGGAATGTGGGCTAGCCCTTTTGCCAAGAGGATCGAACTCGCCCTCAAAATCAAAGGCATCCCTTTTGAATATGTCGAAGAAGATCTCCAGAACAAAAGCTTAGACCTTCTCAAATTCAATCCTATTTACAAGAAAGTTCCTGTTCTTGTCCACAATGGAAGACCCATTTGCGAATCATCTCTAATTTTTGAGTACATTGAGGAAGTTTGGAACAACAATGGCCCTTCCCTTCTACCTCAAGATCCCTACAAACGAGCCCAGGTTCGGTTCTGGGCTGATTTCGTTCAGAAACAGTTGTTTGAGGGTCTATTTTTATTAATGAAGACAGAAGGAGAAGCACAAGAGAAAGCCATTAATGAAGTGAAAGAGAAGTTGAAAGTTCTTGAAGAACAGGGGTTGAAGAGTTTGCTGGCAGAGGGAAGTACTCCATTTGTGAATGGAGATGAACTTGGATATTTGGACATAGTGATGTTGACAGTGCTTGGACTGTACAAGATTCATGAAGAGTTTTTTGGAGTCAAAATTGTGGAAGAAGAGAAGATCCCAATTGTGTTTTCATGGTTGAACAGATTGATAGAGCATCCTATTGCAAAGGAGGTAGCTCCTCCCAAAGAAAAGGTTTTGGGGTTTCTTCACTTCATCAGGCAAAAATTGCTCAACTCCCAGGCTGCTGCTTAA 708 41.67 MAEENRVVLYGMWASPFAKRIELALKIKGIPFEYVEEDLQNKSLDLLKFNPIYKKVPVLVHNGRPICESSLIFEYIEEVWNNNGPSLLPQDPYKRAQVRFWADFVQKQLFEGLFLLMKTEGEAQEKAINEVKEKLKVLEEQGLKSLLAEGSTPFVNGDELGYLDIVMLTVLGLYKIHEEFFGVKIVEEEKIPIVFSWLNRLIEHPIAKEVAPPKEKVLGFLHFIRQKLLNSQAAA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26583581 26584383 - CaPI482276_04g012640.1 Cam04g1264 125342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1264 235 Pfam Glutathione S-transferase, N-terminal domain 7 78 IPR004045 -
Cam04g1264 235 Gene3D - 88 232 - -
Cam04g1264 235 FunFam Tau class glutathione S-transferase 1 88 - -
Cam04g1264 235 Pfam Glutathione S-transferase, C-terminal domain 117 205 IPR004046 -
Cam04g1264 235 CDD GST_N_Tau 7 80 - -
Cam04g1264 235 SFLD Main.3: Omega- and Tau-like 4 233 IPR045073 -
Cam04g1264 235 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 220 IPR010987 -
Cam04g1264 235 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 221 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cam04g1264 235 ProSiteProfiles Glutaredoxin domain profile. 1 98 - -
Cam04g1264 235 SFLD Glutathione Transferase (cytosolic) 4 233 IPR040079 -
Cam04g1264 235 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Cam04g1264 235 Coils Coil 121 141 - -
Cam04g1264 235 FunFam Glutathione S-transferase U9 88 231 - -
Cam04g1264 235 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cam04g1264 235 CDD GST_C_Tau 92 221 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cam04g1264 235 Gene3D Glutaredoxin 1 87 - -
Cam04g1264 235 SUPERFAMILY GST C-terminal domain-like 78 228 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1264 K00799 - - csv:101217019 422.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1264 Cam-Chr4:26583581 Cam07g1083 Cam-Chr7:25295552 5.40E-46 dispersed
Cam04g1263 Cam-Chr4:26581747 Cam04g1264 Cam-Chr4:26583581 2.20E-111 tandem
Cam04g1264 Cam-Chr4:26583581 Cam04g1265 Cam-Chr4:26589071 9.50E-91 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75