Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1275 ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATACCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCGGGAGTGATGGGGTTCAACTCTGAAGCAGTAACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACCACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATACAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA 852 51.41 MEAGNDQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAVTNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26628138 26629943 + CaPI482276_04g012750.1 Cam04g1275 125353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1275 283 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 165 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cam04g1275 283 MobiDBLite consensus disorder prediction 246 283 - -
Cam04g1275 283 Pfam TCP family transcription factor 50 153 IPR017887 -
Cam04g1275 283 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Cam04g1275 283 MobiDBLite consensus disorder prediction 1 23 - -
Cam04g1275 283 MobiDBLite consensus disorder prediction 46 62 - -
Cam04g1275 283 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1275 Cam-Chr4:26628138 Cam11g1373 Cam-Chr11:26425977 4.40E-34 dispersed
Cam05g1519 Cam-Chr5:19353250 Cam04g1275 Cam-Chr4:26628138 1.60E-29 transposed
Cam04g1275 Cam-Chr4:26628138 Cam05g2637 Cam-Chr5:33849672 4.70E-44 wgd
Cam04g1275 Cam-Chr4:26628138 Cam06g1770 Cam-Chr6:28886272 9.70E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51808 PF03634 TCP 6.10E-36 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1275 - - - 0.0