Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g1275 | ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATACCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCGGGAGTGATGGGGTTCAACTCTGAAGCAGTAACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACCACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATACAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA | 852 | 51.41 | MEAGNDQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAVTNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26628138 | 26629943 | + | CaPI482276_04g012750.1 | Cam04g1275 | 125353 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g1275 | 283 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 42 | 165 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cam04g1275 | 283 | MobiDBLite | consensus disorder prediction | 246 | 283 | - | - | |
Cam04g1275 | 283 | Pfam | TCP family transcription factor | 50 | 153 | IPR017887 | - | |
Cam04g1275 | 283 | ProSiteProfiles | TCP domain profile. | 52 | 106 | IPR017887 | - | |
Cam04g1275 | 283 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cam04g1275 | 283 | MobiDBLite | consensus disorder prediction | 46 | 62 | - | - | |
Cam04g1275 | 283 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g1275 | Cam-Chr4:26628138 | Cam11g1373 | Cam-Chr11:26425977 | 4.40E-34 | dispersed | |
Cam05g1519 | Cam-Chr5:19353250 | Cam04g1275 | Cam-Chr4:26628138 | 1.60E-29 | transposed | |
Cam04g1275 | Cam-Chr4:26628138 | Cam05g2637 | Cam-Chr5:33849672 | 4.70E-44 | wgd | |
Cam04g1275 | Cam-Chr4:26628138 | Cam06g1770 | Cam-Chr6:28886272 | 9.70E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51808 | PF03634 | TCP | 6.10E-36 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g1275 | - | - | - | 0.0 |