Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1289 ATGACGGTCACCACCACCCAACAACTCTTTGTTGTTGTGTCTCTCATTTCTCTCACTCTCCTCACCACCGCAGTTTTGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTAGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTGTGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTTTGATGGTGTTCAAAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCCGATTCCAAGATCATTTCACTTGGACACGTAGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACCGTCGTCTATAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGCTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA 1155 48.92 MTVTTTQQLFVVVSLISLTLLTTAVLYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGRVMGPDSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26709969 26711362 - CaPI482276_04g012890.1 Cam04g1289 125367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1289 384 Gene3D - 35 377 IPR012334 -
Cam04g1289 384 Pfam Pectate lyase 125 303 IPR002022 -
Cam04g1289 384 SMART amb_all 112 309 IPR002022 -
Cam04g1289 384 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Cam04g1289 384 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Cam04g1289 384 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Cam04g1289 384 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Cam04g1289 384 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Cam04g1289 384 PRINTS Pollen allergen Amb family signature 355 378 IPR018082 -
Cam04g1289 384 PANTHER PECTATE LYASE 18-RELATED 30 380 IPR045032 GO:0030570(InterPro)
Cam04g1289 384 SUPERFAMILY Pectin lyase-like 35 374 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1289 Cam-Chr4:26709969 Cam05g0405 Cam-Chr5:3733631 6.10E-79 dispersed
Cam04g1289 Cam-Chr4:26709969 Cam05g2653 Cam-Chr5:34010859 5.50E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1289 K01728 - csv:101217103 676.781