Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1297 ATGGCTCAGACGGCAAATCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGCGATCTGGATTTTCTTCTACCGCCCAAGAAAATTATCGGTCCAGACGAGAACGGCTTGAAGAAAATTATTGAATATCAGTTCAACGAAGATGGTAATAAGGTCAAGATCACAACCACCACGCGTACTCGCAAGCTCGCCCATGCTCGCCTCAGTAAACACGCCGTTGAGCGCCGATCTTGGGCAAAGTTCGGCGACGCTGTGCACGAAGACGTCGGCAGCCGCCTCACCATGGTCTCCACTGAGGAGATCCTCCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCTGAAGAGCCAAAGGTTGCAGGAGACCCTTTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTGTGTCGTACTTGTGGCAAAAAGGGCGATCATTGGACCTCGAGGTGCCCTTACAAAGACTTGGCACCACAAGGTGAGGGATTGGATAAGACTTCAGCACCAGAGGCTACAGCTGCTGCACCCGGTGCAACAAAGGGAACATATGTTCCTCCAGGTATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGTAGGAATGATGAAAACTCCGTTCGTGTCACCAACCTCTCAGAGGACACAAGAGAGCCTGACCTTCTCGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGATCAGAAGACGGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCTACTTAA 867 50.29 MAQTANRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGLKKIIEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKTSAPEATAAAPGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26773932 26775416 + CaPI482276_04g012970.1 Cam04g1297 125375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1297 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cam04g1297 288 CDD eIF3G 37 156 IPR024675 -
Cam04g1297 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Cam04g1297 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cam04g1297 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Cam04g1297 288 MobiDBLite consensus disorder prediction 163 205 - -
Cam04g1297 288 Gene3D - 164 288 IPR012677 -
Cam04g1297 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Cam04g1297 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cam04g1297 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Cam04g1297 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Cam04g1297 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Cam04g1297 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1297 Cam-Chr4:26773932 Cam05g1344 Cam-Chr5:14686018 1.10E-157 dispersed
Cam04g1297 Cam-Chr4:26773932 Cam09g0112 Cam-Chr9:1935875 2.00E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1297 K03248 - csv:101212619 545.043