Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1302 ATGTTCAAAGTCTTCGCAGTCGCTGCGTTGCCTTGGTCAGCTCTTTTACTATTACAATCTCCTCTTCCCCTCGCAATGCAGTTCTACACTTCTCCAACTGTTCACACCTTCACTTTCTCCTCCTCTCTGCTGCCATGGAATTCGCTTTGGAATCCAGTTCTAAGTAGGCGTCCGCCTCTCTCTCACTCTCAGGCGAGGGCGCGCCACACACTTACGCGCCTTAATTCCTTCAGCGCACTCTGTCTGATATTTTCAGCTTTCGATAATTCTTTCTTTACACTGTCTAGATACTTAGGCATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACCGATCCACCAATGTTTGATGAGCAAGTGGATTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCATCACTATCAATTCCAGCAACTTCTTCTGGCATGTATGGTAGTGAAGCAATTCTTGTTGGTCATACTGGTCCCCTACGAATTGAAAGAAGTTCATTCATGGTGAGTGGTTCAAAATATACCGGCAGTAAGCCTGAAAAACTTTCACAGTCAAAGCCAGGAGTGACTGAAAGCAAAACGGCAGAGCTGTTGGCAGAAACAATTCCTTCCTTCAAGGCGACAGATGAGTCTGATTGGTCCATTCATAACTATGCTGGTAGAAATGAACACTTAATAAGGTCTGGCCAGCTGGGATTGTGCAATGATCCTTTCTGTATTACTTGCCCAACATATAATTTCAAAGCATCACAACAGAAAAGCTCAAGAATTTCAGGCATATTTGACGCCAAGTTTCATAACGATCTCTATGGAGGAGGGAAAGGTTGGGCGGGAAGCTTTCAGTCATTCTGGTGCTTCTTGCTTCCATATATTCCAGGAGTAATGAATCCTCATGCAAAAGTTGTTCAGCAGTGGAACAAGTTTTTTGTCATTTCTTGCTTAGTGGCAATCTTCTTGGACCCATTATTTTTCTTCTTGCTGTCTGTCCAATATAAGAATAAGTGCATCGTTATTGATTGGTCTTTGACCACAGCATTGGTGGTTTTCCGGAGCCTGACTGACTTTATCTATTTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTACGTGGCACCAGAATCCAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCTATGAATTACATTAAAGGAAAATTTTTTGTAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATTATAGTTTTTCTAATCCTGCCAAAGTCTTTGGGGTCATCTGGAGCAAATTATGCCAAAAATCTATTACGCACTGCAGTTACTGTGCAATATATTCCCAGACTGTATAGATTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTGACCTTTATGTTGGCTGGTCATGTTGTTGGGTCTTTCTGGTATCTCCTTGGGCTTCAGGGGGTGAATCGATGTTTTCGAGAGGCCTGCACTAACACTGGAAATGAGAGCTGCTTGGAATATATAGATTGTGGGCATGGGAATGAAGCTGGGAGTCAGATTCAGGATCCACAGCGGGATTCATGGAAAAATAATGAGAATGCTACGGCATGTTTTGCCAAAGAAGGTTTCAATTATGGAATCTATCTTCAGGCTGTAAACCTTACTACAGAAAATAATATAATCACGAGATATACTTACTCCTTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTTACTATGGCTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTAAGACGACGTGATGTTGAGCAATGGATGGAGCATCGTCGCTTACCAGAGAATTTAAGAAGGCAAGTACGACAGGCTGAAAGATACAACTGGGCTTCTACAAGAGGCGTAAATGAAGAGAGGATTTTTGAAAATTTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTTAACAAGGTTCGCATTTTTGCACTGATGGACTATGAGCCTATTTTAGACGCAATACGTGAGAGACTGCGGCAGAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATCATTGAGAAGATGGTTTTCATCGTACGTGGGAAAATGGAGAGCCGTGTAGATGGAAATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAGCATGGTGTCTTGAGCATTCCTCCATAAACAAAGATATGAAGCGGCATCAAGTTCCAGCACCGAGATTGGTCAGCAATCGGACAGTAAAATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGTTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATAAGGTACGAATCACCCTACTGGAGGTACCTAGCTGCAACGCGCATTCAAGTAGCTTGGAGATACAGGAAAAGACGTCTATCTCGAGTTCAAACATCTCAATCTGACTAA 2622 42.72 MFKVFAVAALPWSALLLLQSPLPLAMQFYTSPTVHTFTFSSSLLPWNSLWNPVLSRRPPLSHSQARARHTLTRLNSFSALCLIFSAFDNSFFTLSRYLGMAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPATSSGMYGSEAILVGHTGPLRIERSSFMVSGSKYTGSKPEKLSQSKPGVTESKTAELLAETIPSFKATDESDWSIHNYAGRNEHLIRSGQLGLCNDPFCITCPTYNFKASQQKSSRISGIFDAKFHNDLYGGGKGWAGSFQSFWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQYKNKCIVIDWSLTTALVVFRSLTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYIKGKFFVDLLVVLPLPQIIVFLILPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHVVGSFWYLLGLQGVNRCFREACTNTGNESCLEYIDCGHGNEAGSQIQDPQRDSWKNNENATACFAKEGFNYGIYLQAVNLTTENNIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLAWCLEHSSINKDMKRHQVPAPRLVSNRTVKCLSNVEAFSLRVADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAATRIQVAWRYRKRRLSRVQTSQSD 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26805586 26824578 + CaPI482276_04g013020.1 Cam04g1302 125380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1302 873 Pfam Ion transport protein 309 629 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g1302 873 Gene3D Helix hairpin bin 629 695 - -
Cam04g1302 873 SUPERFAMILY Voltage-gated potassium channels 302 626 - -
Cam04g1302 873 CDD CAP_ED 703 821 IPR000595 -
Cam04g1302 873 Gene3D Jelly Rolls 701 827 IPR014710 -
Cam04g1302 873 SUPERFAMILY cAMP-binding domain-like 631 829 IPR018490 -
Cam04g1302 873 Gene3D - 301 628 - -
Cam04g1302 873 ProSiteProfiles cAMP/cGMP binding motif profile. 716 773 IPR000595 -
Cam04g1302 873 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 293 866 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1302 Cam-Chr4:26805586 Cam06g1430 Cam-Chr6:25765846 1.60E-114 dispersed
Cam04g1302 Cam-Chr4:26805586 Cam01g0049 Cam-Chr1:868856 4.60E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1302 K05391 - csv:101215903 1420.6