Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1306 ATGTTTCCTCTCAATAATGAATGCTTTATTTCAATTACTTTTCCATTTCTTTGTGTCGTCATATTACTGCAGACCTTTGCCTCAAAGTTGTATGGATCAAAGTGTTGTGAAGACTGCCCTACATTGAGGAAAGTGGTGGGACCCGAAGCCGACGTGACGTGTCCTTTGGTTGCTTCAGGGGAGGATGTAGTTAAACTTGAACTTATATTTCAACCCTTCTTTGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGCTCTCCTCCTCCCAAGTTCAAACTGGGGGAGCAATCTATTCCAAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGGACTCCCAGGCTGAACTTGGCTTCTTTTGTAACAACTTGGATGGAGCCAGAGTGTGATAACCTTATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGAAAATCTCAAGGCAAACCCTATGATAAACCCAACATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTATTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTTGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTTCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTTACTCTCAACTTCTCAAAAGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTTATACGGCTTGGCTTTGAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCAAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAACACACCGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGACGCTCAGCACATAGCAGTGCTGCGCGTGGTGATTAGAGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATCGACAGAGTCTTGAAGGAAGTCGAGGCACTACCAACTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGCGTCGAAGATGGTGTGAGAGTTACAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGAAGTAACTTCATATTGGAGACGGCTTGTGGATGGCAGGAGAACTGTTTGCTTCCTTGCTGGTGCAGTCAGTGTTTGTGACTTTGTGTAG 1734 46.66 MFPLNNECFISITFPFLCVVILLQTFASKLYGSKCCEDCPTLRKVVGPEADVTCPLVASGEDVVKLELIFQPFFADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDIDRVLKEVEALPTRVAVKAAEVKAGVEDGVRVTKHVKKSEREIEEEVTSYWRRLVDGRRTVCFLAGAVSVCDFV 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26857470 26860425 + CaPI482276_04g013060.1 Cam04g1306 125384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1306 577 PANTHER GLUTAMATE DECARBOXYLASE 80 560 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cam04g1306 577 FunFam Glutamate decarboxylase 428 515 - -
Cam04g1306 577 FunFam Glutamate decarboxylase 133 427 - -
Cam04g1306 577 CDD DOPA_deC_like 126 506 - -
Cam04g1306 577 Gene3D - 428 515 - -
Cam04g1306 577 FunFam Glutamate decarboxylase 75 132 - -
Cam04g1306 577 SUPERFAMILY PLP-dependent transferases 81 512 IPR015424 -
Cam04g1306 577 Gene3D - 72 132 - -
Cam04g1306 577 Gene3D - 133 427 IPR015421 -
Cam04g1306 577 NCBIfam glutamate decarboxylase 84 511 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cam04g1306 577 Pfam Pyridoxal-dependent decarboxylase conserved domain 104 448 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0872 Cam-Chr1:10177470 Cam04g1306 Cam-Chr4:26857470 2.10E-228 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1306 K01580 - csv:101210903 939.873