Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1313 ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAATAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACGAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGATGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTACGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACAACGACGACGACGACAACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA 1359 51.29 MIGNTATSASPVLPSSEPYSCLENGNNNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26921445 26923483 + CaPI482276_04g013130.1 Cam04g1313 125391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1313 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cam04g1313 452 SMART c2h2final6 103 133 IPR013087 -
Cam04g1313 452 SMART c2h2final6 139 166 IPR013087 -
Cam04g1313 452 SMART c2h2final6 62 84 IPR013087 -
Cam04g1313 452 Gene3D Classic Zinc Finger 39 102 - -
Cam04g1313 452 SUPERFAMILY beta-beta-alpha zinc fingers 59 85 IPR036236 -
Cam04g1313 452 CDD ATP-synt_Fo_b 315 396 - -
Cam04g1313 452 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 200 - -
Cam04g1313 452 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cam04g1313 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 390 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam04g1313 452 Gene3D Classic Zinc Finger 118 188 - -
Cam04g1313 452 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Cam04g1313 452 MobiDBLite consensus disorder prediction 1 49 - -
Cam04g1313 452 FunFam protein indeterminate-domain 12-like 41 109 - -
Cam04g1313 452 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Cam04g1313 452 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
Cam04g1313 452 MobiDBLite consensus disorder prediction 203 222 - -
Cam04g1313 452 Coils Coil 319 381 - -
Cam04g1313 452 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0695 Cam-Chr1:7792728 Cam04g1313 Cam-Chr4:26921445 8.30E-92 dispersed
Cam04g1066 Cam-Chr4:24799697 Cam04g1313 Cam-Chr4:26921445 2.60E-80 dispersed
Cam04g1313 Cam-Chr4:26921445 Cam08g1994 Cam-Chr8:25730325 4.80E-59 dispersed
Cam04g1313 Cam-Chr4:26921445 Cam01g1981 Cam-Chr1:33100665 2.80E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51815 PF00096 zf-C2H2 0.0043 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1313 K25871 - csv:101209426 743.036