Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1320 ATGAAGTCATACTGTAAGCGTTGTCTGGTGCAACATACGGATAAACTTCCCAAAGATGGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCGCCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAACCGTAAGATCCCTTGGCCTCAGATACCTGAAGAGATGAGCCATGATGCTCGAGATTTAATTGATCGATTATTGACAGAAGATCCTAACCAGCGACTTGGAGCTATAGGCGCATCAGAGGTGAAGCAGCATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAACCATTCAGATGGTCATGTCTATCCACACAGTGAACTTGAAGATTCGAGTGATGCCGACAGCTTAAGTGGTGATAGTAGTTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGGATTCAAACCCTCAACCTTCTAAGAAAGTTGTTTGCCTCCAGGCTTTTACTTATTTTATGATTACAGGAAGAACTCCACTGCATACTTCTCCTCCCACCGAAAACCCTTCCTCCCCCCCTCCAAACCATGATCCCTTTCCAAGCTCAAAATCGGTGGGATCACTAATCTTCGAATTTCCGGCTCACAAACAAAGCACCTACCTCGGGCCCAGGACTGTTCGCCGCTGCGCATCTTTGCCGACTACCTTTGATGTGCATTTGATTGCTTCGGTTTTGAGTTGGATTGGCAGCCTTCTTCCTAATTGCTGGGCTTTTCATTGTGATGGATCATGTTCATCTTTGATGTGCGCTTTGGCTTCTTCCATTTGGATTAAGATGGATGGATCGTGGTGCTGTTTTGTTTCAAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA 1077 44.57 MKSYCKRCLVQHTDKLPKDGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDARDLIDRLLTEDPNQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDGHVYPHSELEDSSDADSLSGDSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKDSNPQPSKKVVCLQAFTYFMITGRTPLHTSPPTENPSSPPPNHDPFPSSKSVGSLIFEFPAHKQSTYLGPRTVRRCASLPTTFDVHLIASVLSWIGSLLPNCWAFHCDGSCSSLMCALASSIWIKMDGSWCCFVSNLSQLASINYDLLSKGLKDDPPNHDA 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27041277 27058895 + CaPI482276_04g013200.1 Cam04g1320 125398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1320 358 ProSiteProfiles AGC-kinase C-terminal domain profile. 103 206 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1320 358 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 200 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cam04g1320 358 Gene3D Transferase(Phosphotransferase) domain 1 20 120 - -
Cam04g1320 358 Gene3D Phosphorylase Kinase; domain 1 121 131 - -
Cam04g1320 358 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1320 358 MobiDBLite consensus disorder prediction 145 179 - -
Cam04g1320 358 Pfam Protein kinase domain 20 102 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1320 358 SUPERFAMILY Protein kinase-like (PK-like) 21 140 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1320 Cam-Chr4:27041277 Cam06g0720 Cam-Chr6:9751194 9.20E-21 dispersed
Cam04g1320 Cam-Chr4:27041277 Cam03g1554 Cam-Chr3:30477118 1.50E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85145 PF00069 Pkinase 6.20E-13 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1320 K08789 - csv:101214945 347.436