Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0011 ATGGAGTTTGGGGAGTGGGGAGTGGGGGCACACCCAGAGCAAAGACGAATAATGGAAACTGGATCCCAAAGATCATCAGGGCGAGGGCAGGTTGTTCCCAATATCAATTATCAAGTTCAAGTGTCGTTCCATCTCTCAAATGCACCGCATGATCCCCAGCCCATCCAGGAAATGGGATTCGTGCAATTGGAAGAGCAGAGCCAGGTTTTGAGCTTCTTGGCACCAAATAACGCCGCCATGCCACCTGCCTTTACTAACCCTACTACTTCTGCTCACACCTCACACCTCCTGCCTCGACCTTCTTGGAGTTCACAACAGCAGGTGGGCGGAACAGTGGATCCGAAGGCCGGGAACGAGGAAAACTGCACGGGTAGTGCTAGTGACGGCAGCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGAGTGGAGAGACTGTCGGAGGATTGCCGGATGGTGATAACCACCTACGAAGGTAGACACAACCACTCTCCTTGCGACGACTCCAATTCTTCAGAGCACGAACCCTTTACATCCTTCTGA 723 50.76 MEFGEWGVGAHPEQRRIMETGSQRSSGRGQVVPNINYQVQVSFHLSNAPHDPQPIQEMGFVQLEEQSQVLSFLAPNNAAMPPAFTNPTTSAHTSHLLPRPSWSSQQQVGGTVDPKAGNEENCTGSASDGSNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 608357 610524 + CaPI482276_05g000110.1 Cam05g0011 125415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0011 240 Gene3D WRKY domain 153 219 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0011 240 MobiDBLite consensus disorder prediction 86 140 - -
Cam05g0011 240 ProSiteProfiles WRKY domain profile. 161 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0011 240 SMART WRKY_cls 166 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0011 240 MobiDBLite consensus disorder prediction 86 139 - -
Cam05g0011 240 SUPERFAMILY WRKY DNA-binding domain 158 224 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0011 240 FunFam WRKY transcription factor 57 152 226 - -
Cam05g0011 240 MobiDBLite consensus disorder prediction 1 30 - -
Cam05g0011 240 MobiDBLite consensus disorder prediction 221 240 - -
Cam05g0011 240 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 93 231 IPR044810 GO:0003700(InterPro)
Cam05g0011 240 Pfam WRKY DNA -binding domain 167 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0011 Cam-Chr5:608357 Cam05g1512 Cam-Chr5:19018391 1.40E-28 dispersed
Cam05g0011 Cam-Chr5:608357 Cam02g0105 Cam-Chr2:2195613 1.20E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51819 PF03106 WRKY 1.60E-24 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0011 - - - 0.0