Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g0011 | ATGGAGTTTGGGGAGTGGGGAGTGGGGGCACACCCAGAGCAAAGACGAATAATGGAAACTGGATCCCAAAGATCATCAGGGCGAGGGCAGGTTGTTCCCAATATCAATTATCAAGTTCAAGTGTCGTTCCATCTCTCAAATGCACCGCATGATCCCCAGCCCATCCAGGAAATGGGATTCGTGCAATTGGAAGAGCAGAGCCAGGTTTTGAGCTTCTTGGCACCAAATAACGCCGCCATGCCACCTGCCTTTACTAACCCTACTACTTCTGCTCACACCTCACACCTCCTGCCTCGACCTTCTTGGAGTTCACAACAGCAGGTGGGCGGAACAGTGGATCCGAAGGCCGGGAACGAGGAAAACTGCACGGGTAGTGCTAGTGACGGCAGCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGAGTGGAGAGACTGTCGGAGGATTGCCGGATGGTGATAACCACCTACGAAGGTAGACACAACCACTCTCCTTGCGACGACTCCAATTCTTCAGAGCACGAACCCTTTACATCCTTCTGA | 723 | 50.76 | MEFGEWGVGAHPEQRRIMETGSQRSSGRGQVVPNINYQVQVSFHLSNAPHDPQPIQEMGFVQLEEQSQVLSFLAPNNAAMPPAFTNPTTSAHTSHLLPRPSWSSQQQVGGTVDPKAGNEENCTGSASDGSNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 608357 | 610524 | + | CaPI482276_05g000110.1 | Cam05g0011 | 125415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g0011 | 240 | Gene3D | WRKY domain | 153 | 219 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g0011 | 240 | MobiDBLite | consensus disorder prediction | 86 | 140 | - | - | |
Cam05g0011 | 240 | ProSiteProfiles | WRKY domain profile. | 161 | 223 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g0011 | 240 | SMART | WRKY_cls | 166 | 225 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g0011 | 240 | MobiDBLite | consensus disorder prediction | 86 | 139 | - | - | |
Cam05g0011 | 240 | SUPERFAMILY | WRKY DNA-binding domain | 158 | 224 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g0011 | 240 | FunFam | WRKY transcription factor 57 | 152 | 226 | - | - | |
Cam05g0011 | 240 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cam05g0011 | 240 | MobiDBLite | consensus disorder prediction | 221 | 240 | - | - | |
Cam05g0011 | 240 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 93 | 231 | IPR044810 | GO:0003700(InterPro) | |
Cam05g0011 | 240 | Pfam | WRKY DNA -binding domain | 167 | 223 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0011 | Cam-Chr5:608357 | Cam05g1512 | Cam-Chr5:19018391 | 1.40E-28 | dispersed | |
Cam05g0011 | Cam-Chr5:608357 | Cam02g0105 | Cam-Chr2:2195613 | 1.20E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51819 | PF03106 | WRKY | 1.60E-24 | CL0274 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g0011 | - | - | - | 0.0 |