Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0042 ATGGAACCATTTTTCAATTATATTGAAGCATCTGATGCTAAAGCAACCACCTTTTGCAACTCTGCCTCTATCACAACCCATGAATACCAACAAGTTTCTAAGAACCGTAAACAGAGGAGCACTCAAGAAAACAGAGATCATCACCCTATGTTCAGAGGAGTTCGAAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCTATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTACCTCGCCCGCTCTCCAGGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCAGCCGCCACATTTTCCGCTGGAAGTGACGCTGAAGGTGGAGGAGGAGAAGCGGCGGAGGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACGGGGGAGACAGAACAGAGGACTCTACAAACTCCCTGTCGACGGCAGCCGGTGATGAGACATTGTTCGATTTGCCAGATTTGTTCGTCGGAAGTTCTGATTTGAAAGACGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTCTGTGCTGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCATTCTGGGAACTAATTTAA 690 50.43 MEPFFNYIEASDAKATTFCNSASITTHEYQQVSKNRKQRSTQENRDHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSAGSDAEGGGGEAAEESRETLFPGSDGGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 948858 949547 - CaPI482276_05g000420.1 Cam05g0042 125446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0042 229 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0042 229 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Cam05g0042 229 CDD AP2 51 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0042 229 MobiDBLite consensus disorder prediction 27 48 - -
Cam05g0042 229 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0042 229 MobiDBLite consensus disorder prediction 138 176 - -
Cam05g0042 229 Pfam AP2 domain 51 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0042 229 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677(InterPro)
Cam05g0042 229 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0042 229 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0042 229 MobiDBLite consensus disorder prediction 32 48 - -
Cam05g0042 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 202 IPR051032 -
Cam05g0042 229 SMART rav1_2 50 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0042 Cam-Chr5:948858 Cam09g0177 Cam-Chr9:2557370 2.10E-34 dispersed
Cam05g0042 Cam-Chr5:948858 Cam06g0253 Cam-Chr6:4367494 2.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51826 PF00847 AP2 4.30E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0042 - - - 0.0