Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0047 ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCGTTTCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCATCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGATGAGGCTGAGGCTGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGGCAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTGTCTTCGTCTTCTTCGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCTCGATGGCCATTAACCCGTGGGCAGTGTTACCAATCCAACGTTGA 888 52.93 MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSASAATTTRHPAAASVQRPSMAINPWAVLPIQR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 989828 991826 + CaPI482276_05g000470.1 Cam05g0047 125451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0047 295 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam05g0047 295 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634(InterPro)
Cam05g0047 295 Pfam Homeodomain 142 196 IPR001356 GO:0003677(InterPro)
Cam05g0047 295 CDD homeodomain 142 199 IPR001356 GO:0003677(InterPro)
Cam05g0047 295 MobiDBLite consensus disorder prediction 114 143 - -
Cam05g0047 295 Gene3D - 135 203 - -
Cam05g0047 295 SMART HOX_1 140 202 IPR001356 GO:0003677(InterPro)
Cam05g0047 295 SMART halz 198 241 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0047 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 275 IPR050762 -
Cam05g0047 295 Coils Coil 204 234 - -
Cam05g0047 295 MobiDBLite consensus disorder prediction 80 96 - -
Cam05g0047 295 Pfam Homeobox associated leucine zipper 198 232 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0047 295 MobiDBLite consensus disorder prediction 71 143 - -
Cam05g0047 295 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677(InterPro)
Cam05g0047 295 SUPERFAMILY Homeodomain-like 128 199 IPR009057 -
Cam05g0047 295 FunFam Homeobox-leucine zipper protein 18 127 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0047 Cam-Chr5:989828 Cam10g0242 Cam-Chr10:4195991 3.80E-73 dispersed
Cam05g0047 Cam-Chr5:989828 Cam09g0376 Cam-Chr9:4132383 8.60E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51827 PF04618 HD-ZIP_N 3.90E-31 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0047 K09338 - csv:101222132 441.425