Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0059 ATGAACGGCAAAACTCCGGCCACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATTAAGATTCTCGATCGTGAAAAAGTTCTTCGCCACAGGATGGTCGAACAGATCAAAAGAGAGATTTCGACTCTGAAAGTGATCAAGCATCCGAATGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAGATAGCCGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATAAATGCTGTAGATTACTGCCATAGTAGAGGCGTCTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTGCGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACACCAAACTACGTAGCTCCTGAGGTCTTCAATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGGGTTATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTACAGAAAAATTTCAAATGCTGATTTTTCCTTTCCATCATGGTTCTCAAGTGGTGCAAGAAAACTAGTTTGCCGCATTCTTGATCCAGACCCTATTAATCGAATAACAATAGCCGAAATTCAAGAAGATCCATGGTTCAAGAAGGGCTACACACCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCAAAGGAACATCTTGTGACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAGGAAACTGCAAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAAACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTTGAGGTGGCTCCTTCATTGCATATGGTCGAGCTTCGGAAAACAGGGGGCGATACGCTCGAGTTTCATAAGGCATGTCATCAGTATTCTTAG 1272 43.63 MNGKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYRKISNADFSFPSWFSSGARKLVCRILDPDPINRITIAEIQEDPWFKKGYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACHQYS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1051400 1056113 - CaPI482276_05g000590.1 Cam05g0059 125463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0059 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g0059 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam05g0059 423 CDD STKc_SnRK3 14 269 - -
Cam05g0059 423 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Cam05g0059 423 FunFam Non-specific serine/threonine protein kinase 306 423 - -
Cam05g0059 423 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Cam05g0059 423 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Cam05g0059 423 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0059 423 Gene3D Kinase associated domain 1, KA1 306 423 - -
Cam05g0059 423 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Cam05g0059 423 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Cam05g0059 423 CDD CIPK_C 313 419 - -
Cam05g0059 423 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cam05g0059 423 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Cam05g0059 423 Pfam NAF domain 309 369 IPR004041 GO:0007165(InterPro)
Cam05g0059 423 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0059 423 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2540 Cam-Chr1:37003094 Cam05g0059 Cam-Chr5:1051400 1.10E-170 dispersed
Cam03g0790 Cam-Chr3:8904221 Cam05g0059 Cam-Chr5:1051400 2.00E-174 dispersed
Cam05g0059 Cam-Chr5:1051400 Cam06g1220 Cam-Chr6:23449650 5.10E-135 dispersed
Cam06g0181 Cam-Chr6:3675627 Cam05g0059 Cam-Chr5:1051400 8.40E-73 transposed
Cam11g0055 Cam-Chr11:2136773 Cam05g0059 Cam-Chr5:1051400 1.20E-67 transposed
Cam01g0015 Cam-Chr1:601878 Cam05g0059 Cam-Chr5:1051400 7.10E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85147 PF00069 Pkinase 1.10E-71 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0059 - - - 0.0