Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0107 ATGCCCAAGTTAATGGGTTCTCAGATACCAAAATCTGTAAGGTTTGGACATCCAACTGCTGGAGGTTACCAATACAGAAGCAGACTGTCTCCAGGGTCAATATTGGAAAGCATAGAGAGAAAATTTTCAAGTGTTTCTAATAGCTTTAGAAGAATAATAACACACTTAGGCTTCAAGCATCCAGGTGATCAGTCAGTAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCATCTGTCATAGCAGTAGCTGTGGATCCTCTCTTCTTTTACGTCCCAGTGATCGATGCACAACGTCAATGCCTAACCATGGACCGACAACTTATGATCATTGCTTGTGTTCTTCGTTCATTCATCGATTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACTGGTTTTCTTCCCCCTTCTTTACCGGTTTTTGGAAGTGGTGAATTAATCAAAGATCCAGCCAAAATAGCAAAGAAATATCTCTTCTCAAACTTCTTGATCGATATCTTATCCATTCTCCCACTACCTCAGCTTTTGGTATTAGCAATCGTACCTGCAGCGAAAGGCTCAACTGCCTTGAAGACAAAGAACGTCGTGAAGACTGCAGTTCTTTTGCAATATGTTCCAAGACTTCTCCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAGCCAAATGCTGGCTCCAAGCATGCAGCAAAGATGAATGTATTGACAATTTTCTGCACTGTGGAGATCGTAAAAAACAAATCTCCCAGTCTATAAATGAGTTTTGCTCTCCTAAAGAGTCTGAAGATGGAAAGAGCTTCGAGTTTGGGATGTATGTTGAAGCCCTCAAGTTTAACTTAACCGAGACGACGAGTTTTCGCCGCAAATTCTGCTATTCCTTCTGGTGGGCTCTGCGAAATGTCGGCTCTAGCGGACAAAACCTTGATGTAGGCAATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTATTCGCGTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCTGAGCATTGGATGGCACATCGTATGCTCCCAGAGGGGTTGAGGCAGCGTATTCGACGATATGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTGAGAAGAGACATCAAACGCCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCACTTTTTAACAGCATGAATAAACAACTGTTGGACGCAATGTGCGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTGTGCAAGAGGGTGACCCAATTGATATGATGCTATTTATTATGAAAGGAAAGCTGGCTACCATTATTACTTGTGATTGGAAAAACGACCCGTACTTGGCCACGCTTAATGCTGGTGACTTCTGTGGCGAAGAGCTAGTTCAATGGGCAATGGATCCCACCTCCACCAGTTCTCTTCCTATTTCACAAAGAACAGTTAAAACTCTAACTGAGGTTGAAGCCTTTTCTCTAAAGGCTAATGAGCTGAAATCTGTAACTAGTCAGTTCCACTTTCAGCGCCTTAATAACAAGCAATTCCAACTCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTACAAAATACAAGAAGCTTGGCATGATTACCGCGAAAGAAGGCGGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTAGCTAAAACAATTGGCGCCTCGGCGAGCTTTAGTGCCACTCTGTATGCATCCATATTCATATCCCATCTACTGCAAGCTGTGCAGCGAGATCAACACCAGCAAACTGCCCAAGTCACACGAGTGATGACACTACCGCCGCCTCCGAAGCCAGACGATGAGCAAGACAAGCCAAATTTCACCATCTTGGATCTTTAA 2127 42.5 MPKLMGSQIPKSVRFGHPTAGGYQYRSRLSPGSILESIERKFSSVSNSFRRIITHLGFKHPGDQSVKKPKFWKKILDPHKPFLQQWNKIFVLSSVIAVAVDPLFFYVPVIDAQRQCLTMDRQLMIIACVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIKDPAKIAKKYLFSNFLIDILSILPLPQLLVLAIVPAAKGSTALKTKNVVKTAVLLQYVPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQAKCWLQACSKDECIDNFLHCGDRKKQISQSINEFCSPKESEDGKSFEFGMYVEALKFNLTETTSFRRKFCYSFWWALRNVGSSGQNLDVGNYMGEVFFAVFIAILGLVLFALLISNIQKYLQSTTVKIEQMRINRRDAEHWMAHRMLPEGLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHLCLAHLKKVPLFNSMNKQLLDAMCEYLKPVLFTEKSFIVQEGDPIDMMLFIMKGKLATIITCDWKNDPYLATLNAGDFCGEELVQWAMDPTSTSSLPISQRTVKTLTEVEAFSLKANELKSVTSQFHFQRLNNKQFQLSVRFYSHQWKVWAAYKIQEAWHDYRERRRRGGGDGRFQDALAKTIGASASFSATLYASIFISHLLQAVQRDQHQQTAQVTRVMTLPPPPKPDDEQDKPNFTILDL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1361155 1364662 - CaPI482276_05g001070.1 Cam05g0107 125511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0107 708 MobiDBLite consensus disorder prediction 693 708 - -
Cam05g0107 708 SUPERFAMILY cAMP-binding domain-like 406 592 IPR018490 -
Cam05g0107 708 ProSiteProfiles cAMP/cGMP binding motif profile. 476 559 IPR000595 -
Cam05g0107 708 Gene3D Jelly Rolls 474 592 IPR014710 -
Cam05g0107 708 Gene3D Helix hairpin bin 402 467 - -
Cam05g0107 708 SMART cnmp_10 476 606 IPR000595 -
Cam05g0107 708 FunFam Cyclic nucleotide-gated ion channel 1 403 467 - -
Cam05g0107 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 669 - -
Cam05g0107 708 MobiDBLite consensus disorder prediction 686 708 - -
Cam05g0107 708 Gene3D - 89 400 - -
Cam05g0107 708 SUPERFAMILY Voltage-gated potassium channels 77 398 - -
Cam05g0107 708 Pfam Ion transport protein 92 401 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g0107 708 CDD CAP_ED 476 608 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0107 Cam-Chr5:1361155 Cam10g1213 Cam-Chr10:25495479 1.80E-161 dispersed
Cam05g0107 Cam-Chr5:1361155 Cam05g0108 Cam-Chr5:1367461 1.60E-162 tandem
Cam01g0049 Cam-Chr1:868856 Cam05g0107 Cam-Chr5:1361155 1.10E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0107 K05391 - csv:101206492 1151.73