Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0151 ATGGAGGAATATGGCAAACTACAATACCCACCTCCGCCGCCGTCGCCGCCTCCGCCATGTTCAGATCCTGATGCAACCCCTCTAGAAATCGACTGGATCGCAGTTCTCTCTGGCCAAGAAGTCACTGGAGACTTAGCGCCGGCAGCAGCAACTTGCGAGTCATCGGAAACGAGAAGGGACGAAGAGAAGGGGGAGCGGAGGAAGAAAGGCGGTCGCCGGTGGAGAAGGACCGCCGGCTGCCGGAGGTTTGAGTTTCAGACGAGGAGTGCTGAAGATATTCTTGATGATGGATATCGGTGGCGCAAGTACGGACAAAAAGCTGTCAAACACAGCCTCCATCCGAGGAGCTATTATAGGTGTACATACCTCACATGCAATGTGAAGAAACAAGTTCAAAGGCTATCAAAAGACACAAGCATTGTTGTGACTACTTATGAGGGAACTCACAACCATCCTTCTCACTTCCTCATGCAAACCCTAACTCCTCTTCTCAAACAAATTCAAACTACTTTTCCACTTTCTAAATTTTTTATGTATTAG 540 48.89 MEEYGKLQYPPPPPSPPPPCSDPDATPLEIDWIAVLSGQEVTGDLAPAAATCESSETRRDEEKGERRKKGGRRWRRTAGCRRFEFQTRSAEDILDDGYRWRKYGQKAVKHSLHPRSYYRCTYLTCNVKKQVQRLSKDTSIVVTTYEGTHNHPSHFLMQTLTPLLKQIQTTFPLSKFFMY 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1675451 1676317 - CaPI482276_05g001510.1 Cam05g0151 125555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0151 179 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 152 IPR044810 GO:0003700(InterPro)
Cam05g0151 179 MobiDBLite consensus disorder prediction 1 26 - -
Cam05g0151 179 FunFam WRKY transcription factor 57 80 154 - -
Cam05g0151 179 SMART WRKY_cls 94 153 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0151 179 ProSiteProfiles WRKY domain profile. 89 154 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0151 179 MobiDBLite consensus disorder prediction 7 24 - -
Cam05g0151 179 SUPERFAMILY WRKY DNA-binding domain 87 152 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0151 179 Gene3D WRKY domain 78 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0151 179 MobiDBLite consensus disorder prediction 54 68 - -
Cam05g0151 179 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0151 179 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0151 Cam-Chr5:1675451 Cam07g1566 Cam-Chr7:30354969 8.70E-28 dispersed
Cam05g0151 Cam-Chr5:1675451 Cam07g0799 Cam-Chr7:20042763 5.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51836 PF03106 WRKY 4.30E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0151 - - - 0.0