Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0153 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTCCTCTTCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCTCCCTTCAAGATCCATTTCAACCCCCCAATTGCAACTCCACCGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGAGTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACGGATGACTGCTTTTCCGATGAGTTTCCGGCGAGTTTCGACCTTCCATGGTTGTTTAATGGAAACCCAGACAGCGAAATTGTAAAACTCCCTTGTTAA 1011 49.95 MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSSSSVSSSSNNSIPFSFTRDLTNQTKSHFFSLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPASFDLPWLFNGNPDSEIVKLPC 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1694607 1695795 - CaPI482276_05g001530.1 Cam05g0153 125557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0153 336 FunFam WRKY transcription factor 22 142 212 - -
Cam05g0153 336 SUPERFAMILY WRKY DNA-binding domain 156 219 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0153 336 Gene3D WRKY domain 142 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0153 336 SMART WRKY_cls 158 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0153 336 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 270 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam05g0153 336 MobiDBLite consensus disorder prediction 22 49 - -
Cam05g0153 336 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0153 336 MobiDBLite consensus disorder prediction 213 282 - -
Cam05g0153 336 ProSiteProfiles WRKY domain profile. 153 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g0153 336 MobiDBLite consensus disorder prediction 216 244 - -
Cam05g0153 336 MobiDBLite consensus disorder prediction 84 151 - -
Cam05g0153 336 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2599 Cam-Chr1:37512448 Cam05g0153 Cam-Chr5:1694607 1.30E-38 dispersed
Cam03g0871 Cam-Chr3:10708151 Cam05g0153 Cam-Chr5:1694607 2.10E-37 dispersed
Cam05g0153 Cam-Chr5:1694607 Cam06g1521 Cam-Chr6:26703692 1.20E-27 dispersed
Cam01g0090 Cam-Chr1:1181597 Cam05g0153 Cam-Chr5:1694607 7.00E-39 wgd
Cam05g0153 Cam-Chr5:1694607 Cam07g0800 Cam-Chr7:20106383 3.30E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51837 PF03106 WRKY 4.50E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0153 K13425 - csv:101217082 504.982