Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0167 ATGACGATGATGATTGGTCTATTTTGTAGTGAAGACAATTCTGGTTTGGGCCGAAGAAAATTTTACTTTTGGTTGGTGATTCACTGGGCCGAGCACTTACTTGGTGGGCCGGCCCAACACGAACCCGTTACACACCGACCCATTACCATCTGGAGTTATGGCTCATCCACCGCTGGATGGATCATCTCGCGGCAATGGAATGAACGTATCCGACGGTCTCAAATAAATTTAATCGTCTACGGCTTTGCTCACAATTCACAAGTTGTTGCTTCCAATTTTCTCGGCACAATCCCTTTGACATTGCGTTCCTCGCAAGGCAGGAACTCGTCTGAGGAGCTTTTAGGAGCTACATTTTCACTTCAATCGGATTCGTCCATAACAGATTTAGTATCTCAATTGATAAATCTTGTGTTCCTGTCTGGTTCTTACGGAGTTTACTGGACATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGCGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCTTCGGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCGGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCAGAGTTTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATCGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAGTGGCGAGCAATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTCGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACACATCATTAAGGAGAATGGTGCAACCTTAGGTAGCACCATGTCAGATTGGACGAACAAAAAGGAAAATTGTTGTGAAATGAAAATAGCTGCAGGTTTGTCCAAGGTTGTAACTGATAGAGGGAATGAAAGAGTAAAGATGCTGGTCTGA 1986 42.7 MTMMIGLFCSEDNSGLGRRKFYFWLVIHWAEHLLGGPAQHEPVTHRPITIWSYGSSTAGWIISRQWNERIRRSQINLIVYGFAHNSQVVASNFLGTIPLTLRSSQGRNSSEELLGATFSLQSDSSITDLVSQLINLVFLSGSYGVYWTYYKDESHSLKSASAWRLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTFGCNLKKMGKEELFSTEQDILLQSVHIIKENGATLGSTMSDWTNKKENCCEMKIAAGLSKVVTDRGNERVKMLV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1814606 1819576 - CaPI482276_05g001670.1 Cam05g0167 125571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0167 661 Gene3D - 373 475 - -
Cam05g0167 661 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 378 460 IPR011014 GO:0016020(InterPro)
Cam05g0167 661 SUPERFAMILY Sm-like ribonucleoproteins 461 526 IPR010920 -
Cam05g0167 661 Pfam Mechanosensitive ion channel, beta-domain 461 528 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g0167 661 Gene3D - 477 525 IPR023408 -
Cam05g0167 661 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 256 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0167 K22047 - - csv:101220483 868.226
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0167 . 240 630 Mechanosensitive Ion Channel Family AT4G00290 67.3 9.8e-154 540.4
Cam08g1624 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Cam10g0719 . 92 765 Mechanosensitive Ion Channel Family AT5G10490 55.4 7.9e-191 664.1
Cam08g1624 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.7e-199 692.2
Cam10g0719 . 80 542 Mechanosensitive Ion Channel Family AT1G58200 65.2 6.4e-172 601.3
Cam02g1162 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.9 8.1e-260 893.6
Cam02g0406 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.2 1.2e-239 826.6
Cam02g1162 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.8 9.8e-247 850.1
Cam02g1162 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.5 1.8e-280 962.2
Cam02g0406 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.8 1.3e-270 929.5
Cam02g1162 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.4 4.1e-237 818.1
Cam02g0406 . 266 950 Mechanosensitive Ion Channel Family AT2G17000 57.7 3.7e-222 768.5
Cam02g1162 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.1 7.0e-163 571.2
Cam05g1732 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.0 3.0e-183 639.0
Cam05g1732 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 3.7e-202 701.8
Cam03g1541 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.6e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33