Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0179 ATGATGTTGGAAAACGAGAGATTGCTTCCAAAATCAGTCCTGCTTGAACTTGCATTCCAACAAAATCTGGAGGAGCTCGCGTCTTCAGTTCCACGAAGTTTCTCCTTCAATGAATTGGGGAATCGCGACAATTGGCAAAACAGAGAGCTCAAGAGAGAACGGTGGAGTGTAAGAAAATGGATGAAATATTGTATATTTGCTTTCGCTTTCTTTCCCTTTACATTATTCCTAGAGTTTCTTATCATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTGGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGATTTGCCTCCTACATATTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCGTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAGCTCGTTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAACTACCCACCGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTGACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATGGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTTAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGCAAAACTTGAAAGTATAAAGGCACAACTAAATGAACAGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTTCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTCGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACGACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGTGGCCTATTGTCCATCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGCTAGACAGTGGACACGATACTTCGCCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA 2868 44.35 MMLENERLLPKSVLLELAFQQNLEELASSVPRSFSFNELGNRDNWQNRELKRERWSVRKWMKYCIFAFAFFPFTLFLEFLIMAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKSSGGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVRADKLCAEAECIEKGIVDMISLHRINKLVMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSETTHRRSQSLPLEQFNSREVGTPSNVRPRGRSLLFDHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLTRRSPSERSDNSIRSPRGVIDMAPSPLSRVELCANGPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKAKLESIKAQLNEQMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPFLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNDETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSIQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1902846 1908612 - CaPI482276_05g001790.1 Cam05g0179 125583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0179 955 Pfam U-box domain 886 955 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g0179 955 CDD RING-Ubox_WDSUB1-like 886 941 - -
Cam05g0179 955 CDD STK_N 126 279 - -
Cam05g0179 955 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 569 669 - -
Cam05g0179 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g0179 955 SUPERFAMILY RING/U-box 880 955 - -
Cam05g0179 955 MobiDBLite consensus disorder prediction 293 339 - -
Cam05g0179 955 SMART Ubox_2 888 951 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g0179 955 ProSiteProfiles Protein kinase domain profile. 597 889 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0179 955 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 883 955 IPR013083 -
Cam05g0179 955 Pfam Protein kinase domain 602 853 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0179 955 PANTHER OS02G0152300 PROTEIN 128 949 IPR051348 -
Cam05g0179 955 SUPERFAMILY Protein kinase-like (PK-like) 571 854 IPR011009 -
Cam05g0179 955 SMART serkin_6 597 862 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0179 955 ProSitePatterns Protein kinases ATP-binding region signature. 603 624 IPR017441 GO:0005524(InterPro)
Cam05g0179 955 Gene3D Phosphorylase Kinase; domain 1 577 669 - -
Cam05g0179 955 Coils Coil 467 571 - -
Cam05g0179 955 Gene3D Transferase(Phosphotransferase) domain 1 670 868 - -
Cam05g0179 955 ProSiteProfiles U-box domain profile. 884 955 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g0179 955 MobiDBLite consensus disorder prediction 293 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1878 Cam-Chr1:32288220 Cam05g0179 Cam-Chr5:1902846 1.60E-68 dispersed
Cam02g2089 Cam-Chr2:33753807 Cam05g0179 Cam-Chr5:1902846 1.40E-131 dispersed
Cam05g0179 Cam-Chr5:1902846 Cam11g0174 Cam-Chr11:3313877 1.60E-91 dispersed
Cam05g0172 Cam-Chr5:1839645 Cam05g0179 Cam-Chr5:1902846 2.40E-44 proximal
Cam07g0205 Cam-Chr7:3207881 Cam05g0179 Cam-Chr5:1902846 3.00E-06 transposed
Cam05g0179 Cam-Chr5:1902846 Cam05g0977 Cam-Chr5:8822766 5.10E-151 wgd
Cam05g0179 Cam-Chr5:1902846 Cam06g0373 Cam-Chr6:5829731 1.50E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85153 PF00069 Pkinase 3.80E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0179 - - - 0.0