Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0210 ATGAGTTTTCTACCACGATTCCACTCTAGCGGCGCCGGCGGGGGAAACGGTGACGGCGACGGCGACGGTGACGGCAGTCTTATGGCCGCTGGTGCTATTGCTCAGCCACATCTTGTTACTCAATCTTCTTTCACTAAATCAATGTTCTCTTCCCCAACGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCGTCGGGGAGATGGTTGCGGCGGATGTTAGGAGGAGGAGTAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGACGGTGGTTCCGGCGAGGAAGTGGAGGGCGGCGGTGGTAGGAAGAAGAGGAAGAAACGGTACCACCGTCACAGTGTGGAACAGATCCAAGAACTGGAAGCTATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTAGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACTCAACTGGAACGCCATGAGAACACATTACTAAGACAAGAGAATGAGAAGCTCCGAACAGAGAATATGGCAATTCGAGAGGCCATGAGAGATCCAATTTGCTCCAACTGCGGTGGACCGGCCATCATCGGAGAAATCTCCATCGAAGAACAGCAACTCCGAATCGAAAATGCCCGATTAAAGGACGAATTGGACCGAGTGTGTGCCCTAGCGGGGAAATTCCTGGGGCGGGCAGCAGTTCCGGTATCGCCGCCATTGGCATCAAGCTCGTGTTTGGAGGAATATGGAGGTGGGATGATGATGATGGAGAGATGCGTGTATTTGGAGATGGGTTTGGCAGCCATGGATGAGGTTGTGAAAATGGCTAATGAGGAAGAGCCATTGTGGGTTAGAGAGAAACTGAATGAAGAAGAATATTTGAGAATGTTCAGTGGGAGTTGTTTTGGGGTTAAACACATTAATAATGGGTTTGTTTTTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCTGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGAGATGTTTCCGAACCTGGTCGCGACGGCAAGCACCACCGACGTAATCTCTGGTGGCATGGGAGGAACCAGGAACGGAGCTCTCCAGCTGATGCATGCAGAGCTTCAAATTCTGTCTCCCATGGTTCCGGTGAGACAATTAAGCTTCCTCCGCTTCTGTAAGCAGCACGCTGAAGGCGTTTGGGTTGTCGTCGATGTCTCCATCGATCCCATTACCGATACTTCTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGAGATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGTTACATTCACGAGCTATACCGGCCCCTCATTCGCTCCGGCCTTGGCTTTGGTGCACCACGGTGGATCGCCACGCTCCAACGCCAATCTGAGTGCCTTGCCATCCTCTCCACCCCGATAGACTATTCTGGAATATCAACGAATGGGCGGCGGAGCATGGTGAAGCTAGCGCAGCGGATGACGGTGAATTTTTGTGCAGGAATATGTGGGTCGACGATATACAAATGGAACAAGCTAAACACGAGAAATAACAACGTTGGAGAAGATGTGAGAGTGATGACGAGGAAGAGTGTGGAGGATCCCGGGGAGCCACCGGGGACAGTGCTGAGTGCAGCGACGTCGGTGTGGGTGGCGGAAGCGGCGGAGAGAGTGTTTGAGTTTCTTCGGGATGAGCGGCTGAGGAGTGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAGATGCTTCATATTCCCAAATCCCAACACCATCACCATCCCAACGCCGTCTCTCTCCTCCGTGCCACCTCTCTAAATCCAAATCAGAGCAGCATGCTAATTCTACAAGAGACTTGCACCGATGCATCGGGATCGCTTGTAGTATACGCGCCGGTGGACATTCCGGCCATGCAGGCGGTAATGAACGGTGGAGATTCAGCATACGTGGCCTTACTACCGTCGGGGTTCGCGGTGGTTCCGGCGGCGGAGGACGGTGGCAGAGGGAGCCTGTTGACGGTGGCGTTTCAGATACTGGTGAACAGTTTGCCGACGGATAAGCTGACGGTGGAGATCTCTTCGATTTCGACCCGACGGCGACCCACTCTCTGCTATGGTTTCGATTTCACCTTTCTGACCTTCAAGTTTGTAAGATGTCCAAATTCTCGTGAATTTCGTGCAAAGTTGCCTTCGTTTCTATGGGGATTTTGTTTCCGTTTCGTTCTTCATAAAGCTCTCTGGGTTCCACTTGATTCTTCCTTCTTTCTGATCTGTCCAACCCCGAATTTCAGATTGATTCTTCACGATAACTTCAATTTGATTCCTTTCGCATAA 2415 51.43 MSFLPRFHSSGAGGGNGDGDGDGDGSLMAAGAIAQPHLVTQSSFTKSMFSSPTLSLALTNIDGLGVGEMVAADVRRRSREEEAAESRSGSENMDGGSGEEVEGGGGRKKRKKRYHRHSVEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRTENMAIREAMRDPICSNCGGPAIIGEISIEEQQLRIENARLKDELDRVCALAGKFLGRAAVPVSPPLASSSCLEEYGGGMMMMERCVYLEMGLAAMDEVVKMANEEEPLWVREKLNEEEYLRMFSGSCFGVKHINNGFVFEASRQTALVFLNTSALLDTLMDPDRWVEMFPNLVATASTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWVVVDVSIDPITDTSSSPPCRRLPSGCLIHEMPNGYSKVTWVEHSEYDESYIHELYRPLIRSGLGFGAPRWIATLQRQSECLAILSTPIDYSGISTNGRRSMVKLAQRMTVNFCAGICGSTIYKWNKLNTRNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAEAAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKSQHHHHPNAVSLLRATSLNPNQSSMLILQETCTDASGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAAEDGGRGSLLTVAFQILVNSLPTDKLTVEISSISTRRRPTLCYGFDFTFLTFKFVRCPNSREFRAKLPSFLWGFCFRFVLHKALWVPLDSSFFLICPTPNFRLILHDNFNLIPFA 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2121602 2131406 - CaPI482276_05g002100.1 Cam05g0210 125614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0210 804 FunFam Homeobox-leucine zipper protein HDG1 98 184 - -
Cam05g0210 804 SUPERFAMILY Bet v1-like 511 711 - -
Cam05g0210 804 ProSiteProfiles START domain profile. 266 496 IPR002913 GO:0008289(InterPro)
Cam05g0210 804 CDD START_ArGLABRA2_like 274 492 - -
Cam05g0210 804 CDD homeodomain 115 168 IPR001356 GO:0003677(InterPro)
Cam05g0210 804 Coils Coil 162 197 - -
Cam05g0210 804 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677(InterPro)
Cam05g0210 804 SMART START_1 275 493 IPR002913 GO:0008289(InterPro)
Cam05g0210 804 SUPERFAMILY Bet v1-like 270 493 - -
Cam05g0210 804 Coils Coil 209 229 - -
Cam05g0210 804 MobiDBLite consensus disorder prediction 75 117 - -
Cam05g0210 804 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam05g0210 804 SMART HOX_1 109 172 IPR001356 GO:0003677(InterPro)
Cam05g0210 804 Pfam START domain 278 492 IPR002913 GO:0008289(InterPro)
Cam05g0210 804 Pfam Homeodomain 111 166 IPR001356 GO:0003677(InterPro)
Cam05g0210 804 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 97 719 IPR042160 -
Cam05g0210 804 MobiDBLite consensus disorder prediction 1 28 - -
Cam05g0210 804 Gene3D - 273 492 IPR023393 -
Cam05g0210 804 SUPERFAMILY Homeodomain-like 99 168 IPR009057 -
Cam05g0210 804 Gene3D - 103 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0210 Cam-Chr5:2121602 Cam09g1150 Cam-Chr9:12205998 3.60E-142 dispersed
Cam05g0210 Cam-Chr5:2121602 Cam05g0949 Cam-Chr5:8569244 1.70E-203 wgd
Cam05g0210 Cam-Chr5:2121602 Cam06g0223 Cam-Chr6:4022139 2.60E-257 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51844 PF01852 START 5.00E-47 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0210 K09338 - csv:101222248 899.042