Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0228 ATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTTTATGAATTTTCAAGCTCAAGCATGCAAGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCATCAACATGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGAATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACCTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAACGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAACTTGAATAATGACGTCAATAAGAAAACGAGAGCCACAATGTGTATTGAGGAAGAGAGGGAATTATTGGCTACCCAATGA 726 42.42 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLAHQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLESSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVERKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSNLNNDVNKKTRATMCIEEERELLATQ 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2265301 2271421 + CaPI482276_05g002280.1 Cam05g0228 125632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0228 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 Coils Coil 89 116 - -
Cam05g0228 241 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam05g0228 241 Coils Coil 123 143 - -
Cam05g0228 241 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam05g0228 241 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam05g0228 241 Coils Coil 145 172 - -
Cam05g0228 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam05g0228 241 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Cam05g0228 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam05g0228 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0228 Cam-Chr5:2265301 Cam06g0205 Cam-Chr6:3860435 3.30E-54 dispersed
Cam01g0326 Cam-Chr1:3644886 Cam05g0228 Cam-Chr5:2265301 5.10E-53 wgd
Cam05g0228 Cam-Chr5:2265301 Cam05g0921 Cam-Chr5:8343523 1.50E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51847 PF01486 K-box 2.60E-25 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0228 - - - 0.0