Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0242 ATGGAGAGCAATCCCGCCGCCTCCGCCGTCGTCGTTAGCAATACCCCAAGCATCCCGCCGGAGAAACGTAACCGTTCCATCTTCGACGTCCCGGCCGACTTCTTTGATTCCTGCAAACTCCTTCGTTCTCCACACTCATACACCTCATCAACCAGCGGCAGCAACAGGGACAGCTCAAGCGCAGAAAACACAGTCGATTCGGAGCAGAACTACAGGGATTTGAAAGAAAGTCCCGTCGCCCACCGATGGACCTGCAACACATGCAAGGCCGAGTTCGAGTCCCTGCTTGACCAGCGTTCGCACTTCAAATCCGACCTTCACCGGTTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGACGAAACAGAGAAGGAGGTTAATTTTCGGAATGAAGGGCCTAAGGGAACAAGTGATACTGCGAACAAGAAGAGGTTGTTTGTTCATCTTCAAACCGGTGAAAGAGCTTCGGTCTGGAAGTGTTTGCTCATAAATGAGTCAGATAATATTTCATACGAAGATGATAAAACATCAATCAGTGGTAATGGCGTTCATGCCCAGTACCTTAGAGAGAATGAAATCATAGCAAGATTAAAATATTTAAATCATGAGCCAAGAGATGGCTCCCATTTGCGGATAGTGTTGCTTGCAAGTGGTGGGCACTTCGCGGGTTGTGTCTTCGATGGAAACATAGTTGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAGTCTGGAAAGAAACAGTCATCAAAAGATGCAAGTGGCAAATCAATCAGTTCCGCTGGGGCTTCACTTCGTCGTCATAATGAACTGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCTGCTTGGAAGTCCTACTTTAATGCTTCATCTTGCGTTTATATTTATGCTCCTTCAAACAATCGGCAATTGCTCTTTAATGGAGACAAGCCTTACTTTAGTGATCAGCATGCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACATTGAAAGAAGCTCGGCGTGTTTATGAACAATTGGTGCAAGTAGTGTATGAAGTAGATGAGAATGAAATATTGTCTACCACTGAGCACGATTCACTATTAAGCGCAGTTACAACGGACAATGGCACCCGAGGTATAAGTGGACAGGAAGTAATTGGAGATTTGGAGAAGGATGCTTGTACACATCTTGAAGAATCTGTTGAACACCCCAAAACTAGTGAGAGTGAAAGTGAAGTTATTTGTAGAACTACACCTTTACATGAAGCATCACAGTCTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGATGAAAGAGGACGTACTCCTTATATGCTAGCAAGCGAGAAGGAAGTCCGAAATAACTTTAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAGGTGCCGAGCGCATTAACCAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCTGAAAAAGATGCCAAGCGAAAGGCTAGAGCAAAGGAGTTGAAAAAATTAAAGAAAGAAAAGGCCAAGAAAGCACAGGCCCTGGATGCTGAATCCCAAAAGGCTGTGAAGCCGGAACAGAGTAGAGGAATCGGCTCTATTTTGAATTCTCGGGCTGAATCAACCAGTGGGAAACTGATTACCAAAGAGATGGCACAGGCTGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAGAAGAATGGCAGCTATGGTCGCAGCTGCAGCCACCAACAATTCCTCGTTGACTACTCCTAACAGCTCGCAGACTAAAAGCGGGTTGGCAGGGGATGTCAACTGCTCCTGCTGCGGTACTTCGCTGGCCGAACCGCAAGTTCGCAGAGCAGCTCTGAAAATGTCTGTTACTTTGCACACAAATCTCGGGGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCCAAGTCTGCCGAGAACTTTTTGGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACCGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGCGCAAATACGAATGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTCGGTAGAGTGATTCATGGGTTCGAAGTACTTGATATCATGGAAAAGACACAAACTGGACCGGGTGATCGTCCTCTTGCAGAGATCAGGCTCAATCGAGTGACGATACACGCTAATCCTCTTGCAGGCTAA 2451 45.12 MESNPAASAVVVSNTPSIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSSTSGSNRDSSSAENTVDSEQNYRDLKESPVAHRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEVNFRNEGPKGTSDTANKKRLFVHLQTGERASVWKCLLINESDNISYEDDKTSISGNGVHAQYLRENEIIARLKYLNHEPRDGSHLRIVLLASGGHFAGCVFDGNIVVAHKTFHRYVVRAKSGKKQSSKDASGKSISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQHAAVRNIPLTVRRPTLKEARRVYEQLVQVVYEVDENEILSTTEHDSLLSAVTTDNGTRGISGQEVIGDLEKDACTHLEESVEHPKTSESESEVICRTTPLHEASQSGNADKVLELLEQGLDPCIKDERGRTPYMLASEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLKKEKAKKAQALDAESQKAVKPEQSRGIGSILNSRAESTSGKLITKEMAQAAEREKRAAAAERRMAAMVAAAATNNSSLTTPNSSQTKSGLAGDVNCSCCGTSLAEPQVRRAALKMSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2387862 2396830 + CaPI482276_05g002420.1 Cam05g0242 125646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0242 816 CDD Cyclophilin_PPIL3_like 657 809 - -
Cam05g0242 816 MobiDBLite consensus disorder prediction 1 21 - -
Cam05g0242 816 ProSiteProfiles Ankyrin repeat region circular profile. 441 473 - -
Cam05g0242 816 MobiDBLite consensus disorder prediction 141 158 - -
Cam05g0242 816 MobiDBLite consensus disorder prediction 140 166 - -
Cam05g0242 816 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 693 710 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cam05g0242 816 FunFam Peptidyl-prolyl cis-trans isomerase 657 816 - -
Cam05g0242 816 SUPERFAMILY Ankyrin repeat 443 495 IPR036770 -
Cam05g0242 816 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Cam05g0242 816 Pfam Bacteroidetes VLRF1 release factor 239 375 IPR041175 -
Cam05g0242 816 Gene3D - 644 816 IPR029000 -
Cam05g0242 816 MobiDBLite consensus disorder prediction 45 73 - -
Cam05g0242 816 MobiDBLite consensus disorder prediction 1 24 - -
Cam05g0242 816 MobiDBLite consensus disorder prediction 520 534 - -
Cam05g0242 816 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 659 808 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam05g0242 816 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 698 710 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam05g0242 816 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 756 768 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam05g0242 816 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 769 784 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam05g0242 816 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 672 687 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam05g0242 816 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 741 756 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam05g0242 816 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 662 809 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam05g0242 816 Coils Coil 517 559 - -
Cam05g0242 816 ProSiteProfiles Ankyrin repeat profile. 441 473 IPR002110 GO:0005515(InterPro)
Cam05g0242 816 MobiDBLite consensus disorder prediction 515 567 - -
Cam05g0242 816 Gene3D - 415 548 IPR036770 -
Cam05g0242 816 MobiDBLite consensus disorder prediction 45 67 - -
Cam05g0242 816 SUPERFAMILY Cyclophilin-like 657 813 IPR029000 -
Cam05g0242 816 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 657 IPR047139 GO:0030433(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0242 Cam-Chr5:2387862 Cam10g1838 Cam-Chr10:32487673 1.30E-41 dispersed
Cam05g0242 Cam-Chr5:2387862 Cam01g1801 Cam-Chr1:31574558 1.80E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0242 K26089 - csv:101216211 995.342