Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g0248 | ATGGATCGAGCCACCGCCGCACACGGCCGTCCGCTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCACCACCATTTCCTCCACCAAAACTCCGATCAACAGCACAATGGAAATAGTAGCTCCGGCGGCGACGGCGGCCGAGACGGTGAGGTCTTGAGACGACCACGAGGCCGCCCCGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGATAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAATGACGTGATCGAAACCCTCACGATTTTCGCACGAAAGCGCCAGCGTGGCATTTGCGTGCTGACCGGCGCCGGAGCGGTCACCAACGTCACCCTCAAGCAGCCGGGGGCCGCGGTCGCCGCCGCTGGACCGGTGATCTCTCTGCCGGGGAGATTTGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCGCCGCCAGCGCCGGCGGCGGCGTCTGGGCTGACCGTGTACTTGTCCGGCGGACAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGGCTACCGGTGGAGGATGACGACGTGGAAGCGGCAACAGCGGCGGATGCCGGAAGTAGTCCGATCAGGTCACCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGAGCACAGGTCGCACTCCACCATTTTAG | 813 | 61.25 | MDRATAAHGRPLPPPFISRNLHLNPHHHFLHQNSDQQHNGNSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARKRQRGICVLTGAGAVTNVTLKQPGAAVAAAGPVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADAGSSPIRSPENAVQQQQFLPELHGLAPHLMNTCQLPTEPYWSTGRTPPF | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2445376 | 2446188 | - | CaPI482276_05g002480.1 | Cam05g0248 | 125652 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g0248 | 270 | FunFam | AT-hook motif nuclear-localized protein | 83 | 215 | - | - | |
| Cam05g0248 | 270 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Cam05g0248 | 270 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 84 | 199 | IPR005175 | - | |
| Cam05g0248 | 270 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 34 | 225 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
| Cam05g0248 | 270 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 80 | 213 | - | - | |
| Cam05g0248 | 270 | CDD | DUF296 | 84 | 155 | IPR005175 | - | |
| Cam05g0248 | 270 | Gene3D | - | 83 | 218 | - | - | |
| Cam05g0248 | 270 | ProSiteProfiles | PPC domain profile profile. | 80 | 220 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam05g0248 | Cam-Chr5:2445376 | Cam05g0298 | Cam-Chr5:2841698 | 2.10E-57 | dispersed | |
| Cam05g0248 | Cam-Chr5:2445376 | Cam05g0256 | Cam-Chr5:2510548 | 3.60E-17 | proximal | |
| Cam01g0352 | Cam-Chr1:3904616 | Cam05g0248 | Cam-Chr5:2445376 | 4.50E-69 | wgd | |
| Cam05g0248 | Cam-Chr5:2445376 | Cam06g0196 | Cam-Chr6:3789490 | 1.30E-67 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g0248 | - | - | - | 0.0 |